AMTR_s00025p00052670 (PUB13, ATPUB13,...)

Aliases : PUB13, ATPUB13, evm_27.TU.AmTr_v1.0_scaffold00025.28

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00052670
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AT1G23030	No alias	ARM repeat superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.04	OrthoFinder output from all 47 species
AT5G01830	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059681	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03944	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13264	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43158.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43159.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44182.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.05	OrthoFinder output from all 47 species
Ceric.13G074400.1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g03673	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g35890	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g36575	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g16944	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g51928	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02654	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g17103	PUB13, ATPUB13	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
Gb_10627	PUB8, B80	U-box domain-containing protein 13 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_13754	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Gb_24088	PUB9, ATPUB9	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os06g51130.1	PUB15, LOC_Os06g51130	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g03070	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g15239	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_27512g0010	PUB15	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
MA_29517g0010	No alias	U-box domain-containing protein 12 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Msp_g07856	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02927	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g07136	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25238	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28240	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35149	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g42410	ATPUB17, PUB17	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01986	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11295	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g30213	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g38766	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17953	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g25353	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382	No alias	not classified & original description: CDS=1-1704	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607	ATPUB17, PUB17	not classified & original description: CDS=1-2595	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017096	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: CDS=1-1548	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=347-2224	0.03	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Solyc06g076040.3.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Solyc09g056450.4.1	PUB9, ATPUB9,...	U-box domain-containing protein 9 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc11g008390.2.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Spa_g08558	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12131	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g06505	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15274	PUB13, ATPUB13	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	415	454
IPR000225	Armadillo	498	536
IPR000225	Armadillo	458	495
IPR003613	Ubox_domain	296	355

External Links

No external refs found!

AMTR_s00025p00052670 (PUB13, ATPUB13,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation