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  5. AMTR_s00024p00225420

AMTR_s00024p00225420 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.224

Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0015202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0015202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00225420
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Gb_28586 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Gb_31599 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_128425g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_28762g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Zm00001e012231_P001 Zm00001e012231 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 504 530
IPR002885 Pentatricopeptide_repeat 136 161
IPR002885 Pentatricopeptide_repeat 532 562
IPR002885 Pentatricopeptide_repeat 240 266
IPR002885 Pentatricopeptide_repeat 108 135
IPR002885 Pentatricopeptide_repeat 605 626
IPR002885 Pentatricopeptide_repeat 165 212
IPR002885 Pentatricopeptide_repeat 429 476
IPR002885 Pentatricopeptide_repeat 297 341
IPR002885 Pentatricopeptide_repeat 267 295
IPR002885 Pentatricopeptide_repeat 398 426
No external refs found!