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  5. AMTR_s00024p00200570

AMTR_s00024p00200570 (AL5,...)


Aliases : AL5, evm_27.TU.AmTr_v1.0_scaffold00024.176

Description : RNA biosynthesis.transcriptional activation.Alfin-like transcription factor


Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00200570

Target Alias Description ECC score Gene Family Method Actions
AT3G42790 AL3 alfin-like 3 0.03 OrthoFinder output from all 47 species
AT5G05610 AL1 alfin-like 1 0.03 OrthoFinder output from all 47 species
Adi_g013182 AL2 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0244.g059922 AL2 methylation reader Alfin of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g33236 AL2 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Cre07.g320950 AL2 RNA biosynthesis.transcriptional activation.Alfin-like... 0.02 OrthoFinder output from all 47 species
Dde_g28698 AL2 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
LOC_Os11g14010.1 AL7, LOC_Os11g14010 Alfin-like transcription factor 0.03 OrthoFinder output from all 47 species
Len_g12567 AL2 methylation reader Alfin of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Msp_g05849 AL1 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Nbi_g27528 AL6 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05035 AL5 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species
Spa_g05741 AL6 methylation reader Alfin of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g05937 AL1 methylation reader Alfin of PRC1 complex & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR021998 Alfin_N 11 147
IPR019787 Znf_PHD-finger 203 251
No external refs found!