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  5. AMTR_s00024p00181670

AMTR_s00024p00181670 (HUB2,...)


Aliases : HUB2, evm_27.TU.AmTr_v1.0_scaffold00024.144

Description : E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica


Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00024p00181670

Target Alias Description ECC score Gene Family Method Actions
Adi_g059765 HUB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09718 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G031900.1 HUB2, Ceric.21G031900 E3 ubiquitin ligase *(HUB) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g20436 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05021 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_28646 HUB2 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Ore_g35898 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10428 RDO4, HUB1 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06419 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35279 No alias E3 ubiquitin ligase *(HUB) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12693 HUB2 E3 ubiquitin ligase *(HUB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25091 RDO4, HUB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!