AMTR_s00023p00208940 (WRKY4,...)

Aliases : WRKY4, evm_27.TU.AmTr_v1.0_scaffold00023.152

Description : RNA biosynthesis.transcriptional activation.WRKY transcription factor

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00023p00208940

Target	Alias	Description	ECC score	Gene Family Method
Adi_g046396	WRKY2, ATWRKY2	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01943	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g15071	ATWRKY58, WRKY58	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g22410	WRKY3	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g38597	WRKY3	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g61706	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12166	AtWRKY20, WRKY20	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g29516	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007006001	AtWRKY20, WRKY20	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
GSVIVT01037775001	AtWRKY20, WRKY20	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
LOC_Os05g40080.1	WRKY54,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os07g39480.1	AtWRKY20,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
LOC_Os12g32250.1	WRKY3, LOC_Os12g32250	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
MA_16118g0010	WRKY2, ATWRKY2	transcription factor (WRKY). transcription factor (WRKY33)	0.03	OrthoFinder output from all 47 species
Mp1g08890.1	WRKY44, TTG2,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Ore_g09401	WRKY43, ATWRKY43	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g34445	ATWRKY50, WRKY50	WRKY-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Solyc06g066370.4.1	WRKY33,...	transcription factor (WRKY). transcription factor (WRKY33)	0.03	OrthoFinder output from all 47 species
Spa_g18909	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26807	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e010647_P001	AtWRKY20,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Zm00001e022143_P002	WRKY4, Zm00001e022143	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Zm00001e029445_P001	WRKY3, Zm00001e029445	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e038062_P002	WRKY4, Zm00001e038062	transcription factor (WRKY)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	193	248
IPR003657	WRKY_dom	388	445

External Links

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AMTR_s00023p00208940 (WRKY4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation