AMTR_s00022p00114710 (emb1507,...)

Aliases : emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00022p00114710

Target	Alias	Description	ECC score	Gene Family Method
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.06	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.08	OrthoFinder output from all 47 species
Aev_g29910	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g04355	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01991	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g40053	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g08117	emb1507	RNA helicase *(Brr2) & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g09018	No alias	RNA helicase *(Brr2) & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g05989	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z134800.1	Ceric.1Z134800	not classified & original description: pacid=50597112...	0.05	OrthoFinder output from all 47 species
Ceric.1Z263400.1	Ceric.1Z263400	RNA helicase *(Brr2) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.27	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.28	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.03	OrthoFinder output from all 47 species
Cre17.g744147	emb1507	RNA processing.RNA splicing.spliceosome...	0.07	OrthoFinder output from all 47 species
Dac_g02389	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12553	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g12406	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g19260	emb1507	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g12876	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
GSVIVT01010769001	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.15	OrthoFinder output from all 47 species
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.07	OrthoFinder output from all 47 species
Gb_27895	emb1507	RNA helicase (Brr2)	0.11	OrthoFinder output from all 47 species
LOC_Os02g01740.1	emb1507, LOC_Os02g01740	RNA helicase (Brr2)	0.06	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.06	OrthoFinder output from all 47 species
Len_g08641	emb1507	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g21125	No alias	RNA helicase *(Brr2) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g05048	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g09106	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
MA_8113344g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.06	OrthoFinder output from all 47 species
MA_81219g0030	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.06	OrthoFinder output from all 47 species
MA_823844g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
MA_930633g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
Mp1g06890.1	emb1507	RNA helicase (Brr2)	0.12	OrthoFinder output from all 47 species
Msp_g15106	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g30444	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25813	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g09832	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g18045	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Smo144158	emb1507	RNA processing.RNA splicing.spliceosome...	0.06	OrthoFinder output from all 47 species
Solyc06g082100.4.1	emb1507, Solyc06g082100	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species
Tin_g07743	emb1507	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e035676_P001	emb1507, Zm00001e035676	RNA helicase (Brr2)	0.08	OrthoFinder output from all 47 species
Zm00001e038727_P001	Zm00001e038727	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	803	882
IPR011545	DEAD/DEAH_box_helicase_dom	506	682
IPR011545	DEAD/DEAH_box_helicase_dom	1352	1520
IPR004179	Sec63-dom	1838	2156
IPR004179	Sec63-dom	1005	1309

External Links

No external refs found!

AMTR_s00022p00114710 (emb1507,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation