AMTR_s00021p00207790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.180

No description available


Gene families : OG0001451 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001451_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00207790

Target Alias Description ECC score Gene Family Method Actions
AT1G03830 No alias guanylate-binding family protein 0.03 OrthoFinder output from all 47 species
AT5G46070 No alias Guanylate-binding family protein 0.07 OrthoFinder output from all 47 species
Adi_g109266 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g42924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07186.t1 Aspi01Gene07186 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29718.t1 Aspi01Gene29718 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056605 No alias not classified & original description: CDS=339-3572 0.05 OrthoFinder output from all 47 species
Ceric.03G061100.1 Ceric.03G061100 not classified & original description: pacid=50572331... 0.03 OrthoFinder output from all 47 species
Ceric.33G001500.1 Ceric.33G001500 not classified & original description: pacid=50606915... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000955.23 No alias No description available 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020999.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g06625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g18712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021121001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01021122001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os02g20410.1 LOC_Os02g20410 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g13643 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10435173g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g01230.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g02442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25158 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02161 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g12795 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e032422_P001 Zm00001e032422 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR003191 Guanylate-bd/ATL_C 312 613
IPR015894 Guanylate-bd_N 49 307
No external refs found!