Sequence Description Alias PCC hrr AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9382733426160265 10 AMTR_s00062p00113470 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.93 0.9269904116106528 12 AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9255710271497676 23 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A, evm_27.TU.AmTr_v1.0_scaffold00111.21 0.925503191627263 10 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.9252963355693968 14 AMTR_s00065p00140150 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor evm_27.TU.AmTr_v1.0_scaffold00065.96 0.9211728795184287 6 AMTR_s00147p00036340 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DegP7, evm_27.TU.AmTr_v1.0_scaffold00147.15 0.9198360760985558 28 AMTR_s00064p00050700 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00064.11 0.9142141947966128 13 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component RPN1A, ATRPN1A, evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9137442444828479 50 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin NUP155, evm_27.TU.AmTr_v1.0_scaffold00060.71 0.9136059050608225 31 AMTR_s00025p00204100 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00025.262 0.9131459833208547 11 AMTR_s00024p00180690 Splicing factor-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.141 0.9126104064517179 12 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.912501759265907 13 AMTR_s00092p00116010 KH domain-containing protein At4g18375 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.77 0.9120608833090912 14 AMTR_s00023p00015970 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS5, evm_27.TU.AmTr_v1.0_scaffold00023.4 0.91123773360724 15 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2, evm_27.TU.AmTr_v1.0_scaffold00122.38 0.9107403276448817 69 AMTR_s00089p00034850 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component evm_27.TU.AmTr_v1.0_scaffold00089.9 0.9107201706549507 17 AMTR_s00088p00153240 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00088.123 0.9105407785281044 18 AMTR_s00022p00242580 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).Augmin gamma-TuRC recruiting complex.AUG5 component evm_27.TU.AmTr_v1.0_scaffold00022.353 0.909395875226267 19 AMTR_s00038p00121420 Phytohormones.abscisic acid.perception and signalling.signal transducer (KEG) KEG, evm_27.TU.AmTr_v1.0_scaffold00038.67 0.9060662863786163 20 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP, evm_27.TU.AmTr_v1.0_scaffold00009.205 0.9056952940077269 21 AMTR_s00068p00177220 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDK9 kinase evm_27.TU.AmTr_v1.0_scaffold00068.133 0.905631500907822 54 AMTR_s00062p00149800 evm_27.TU.AmTr_v1.0_scaffold00062.138 0.9055615447967335 29 AMTR_s00020p00207770 evm_27.TU.AmTr_v1.0_scaffold00020.85 0.9026824306900642 46 AMTR_s00053p00219090 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO chain-forming-ligase E4 enzyme (PIAL) evm_27.TU.AmTr_v1.0_scaffold00053.172 0.9022300192688472 25 AMTR_s00303p00010520 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group MPK20, ATMPK20, evm_27.TU.AmTr_v1.0_scaffold00303.1 0.9004431174802181 28 AMTR_s00164p00059220 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.VSR vacuolar sorting receptor VSR2;2, ATVSR3, BP80-2;2, VSR3, evm_27.TU.AmTr_v1.0_scaffold00164.25 0.8994988495675434 43 AMTR_s00027p00222730 evm_27.TU.AmTr_v1.0_scaffold00027.93 0.8993246128710555 32 AMTR_s00092p00098010 ATILP1, ILP1, evm_27.TU.AmTr_v1.0_scaffold00092.55 0.8981189130499044 49 AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS, evm_27.TU.AmTr_v1.0_scaffold00061.110 0.8977634294664791 87 AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase ATEDR1, EDR1, evm_27.TU.AmTr_v1.0_scaffold00004.8 0.8975804025261185 35 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.8974603767270797 100 AMTR_s00019p00231450 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN5 component CSN5B, CSN5, AJH2, evm_27.TU.AmTr_v1.0_scaffold00019.317 0.8968749306899833 43 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.8958599842755545 39 AMTR_s00078p00055040 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase SDE1, RDR6, SGS2, evm_27.TU.AmTr_v1.0_scaffold00078.28 0.895805916866764 40 AMTR_s00148p00090060 Helicase protein MOM1 OS=Arabidopsis thaliana MOM1, MOM, evm_27.TU.AmTr_v1.0_scaffold00148.61 0.8957435959876587 67 AMTR_s00047p00208850 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component TTN8, ATSMC1, SMC1, evm_27.TU.AmTr_v1.0_scaffold00047.148 0.8956763527549796 80 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.895663258712604 52 AMTR_s00049p00084680 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.extensins (EXTs).glycosylation.EXT serine O-alpha-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00049.55 0.8945935187103327 76 AMTR_s00109p00056900 La protein 1 OS=Arabidopsis thaliana AtLa1, La1, evm_27.TU.AmTr_v1.0_scaffold00109.42 0.8936901674123511 63 AMTR_s00021p00078920 Protein modification.phosphorylation.SCY1 kinase evm_27.TU.AmTr_v1.0_scaffold00021.35 0.8935800852814535 74 AMTR_s00036p00235910 evm_27.TU.AmTr_v1.0_scaffold00036.181 0.8932393966978605 48 AMTR_s00007p00259060 Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana SMU2, evm_27.TU.AmTr_v1.0_scaffold00007.316 0.8930653829381059 67 AMTR_s00209p00023450 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00209.4 0.8925188813247655 71 AMTR_s00029p00058780 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.53 0.8916941367995213 83 AMTR_s00078p00181940 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase evm_27.TU.AmTr_v1.0_scaffold00078.179 0.8913288122873138 54 AMTR_s00010p00163020 DNA damage response.DNA repair mechanisms.nucleotide excision repair (NER).DNA repair protein (RAD4) RAD4, ATRAD4, evm_27.TU.AmTr_v1.0_scaffold00010.125 0.8901150034326617 75 AMTR_s00080p00141940 tRNA ligase 1 OS=Arabidopsis thaliana ATRNL, AtRLG1, RNL, evm_27.TU.AmTr_v1.0_scaffold00080.64 0.8892363013777828 70 AMTR_s00023p00230220 DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana BIN5, RHL2, evm_27.TU.AmTr_v1.0_scaffold00023.183 0.8890926709015365 61 AMTR_s00018p00074980 RNA biosynthesis.transcriptional activation.NAC transcription factor anac045, NAC045, evm_27.TU.AmTr_v1.0_scaffold00018.28 0.888933925828623 62 AMTR_s00120p00067860 Protein modification.S-nitrosylation and denitrosylation.GSNOR S-nitrosoglutathione reductase ADH2, PAR2, HOT5, GSNOR, ATGSNOR1, evm_27.TU.AmTr_v1.0_scaffold00120.32 0.8885140650857798 63 AMTR_s00017p00130610 DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana DCAF1, evm_27.TU.AmTr_v1.0_scaffold00017.53 0.8882312875079937 64 AMTR_s00002p00140630 Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4G component CUM2, EIF4G, evm_27.TU.AmTr_v1.0_scaffold00002.103 0.8880961829083749 65 AMTR_s00044p00129280 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763, evm_27.TU.AmTr_v1.0_scaffold00044.117 0.8880808605078246 66 AMTR_s00040p00151890 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF12 component TAFII58, TAF12, evm_27.TU.AmTr_v1.0_scaffold00040.125 0.8880296374994747 67 AMTR_s00077p00124730 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR, evm_27.TU.AmTr_v1.0_scaffold00077.118 0.8879636362720242 68 AMTR_s00016p00233120 Cell wall.sporopollenin.exine wall formation.NEF1 exine patterning factor NEF1, evm_27.TU.AmTr_v1.0_scaffold00016.232 0.8870832782752106 71 AMTR_s00108p00104150 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins IMPA-9, evm_27.TU.AmTr_v1.0_scaffold00108.20 0.8864140410478084 73 AMTR_s00125p00118080 Solute transport.carrier-mediated transport.APC superfamily.HAK/KUP/KT potassium cation transporter KUP10, evm_27.TU.AmTr_v1.0_scaffold00125.31 0.8863137383501112 74 AMTR_s00001p00152770 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1 RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, evm_27.TU.AmTr_v1.0_scaffold00001.137 0.8860263987118677 76 AMTR_s00038p00136890 Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone GTB1, evm_27.TU.AmTr_v1.0_scaffold00038.82 0.8858509066148933 78 AMTR_s00018p00254940 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.167 0.8857627196935988 79 AMTR_s00029p00238480 evm_27.TU.AmTr_v1.0_scaffold00029.400 0.885556310469809 82 AMTR_s00092p00090110 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor PARL1, ATNUC-L1, NUC-L1, evm_27.TU.AmTr_v1.0_scaffold00092.50 0.8835814377166997 85 AMTR_s00106p00013240 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.SWA2/NOC1 assembly factor EDA25, SWA2, evm_27.TU.AmTr_v1.0_scaffold00106.3 0.8833978078352934 86 AMTR_s00107p00047780 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00107.18 0.8833731434595973 87 AMTR_s00165p00040130 evm_27.TU.AmTr_v1.0_scaffold00165.22 0.8825443580595683 89 AMTR_s00019p00154210 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor At-RSZ22a, RSZ22a, evm_27.TU.AmTr_v1.0_scaffold00019.143 0.8815555452716 91 AMTR_s00106p00090850 evm_27.TU.AmTr_v1.0_scaffold00106.59 0.8813796664344279 93 AMTR_s00062p00040090 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DAWDLE pri-miRNA-DCL1 association factor DDL, evm_27.TU.AmTr_v1.0_scaffold00062.21 0.8810636488791174 94 AMTR_s00036p00067000 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00036.22 0.8809707994432863 95 AMTR_s00092p00127820 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00092.91 0.8808517279996849 96 AMTR_s00009p00216420 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM, evm_27.TU.AmTr_v1.0_scaffold00009.153 0.880281166377754 98 AMTR_s00001p00272900 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8801191766565685 99 AMTR_s00046p00228720 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein HSC70-5, MTHSC70-2, evm_27.TU.AmTr_v1.0_scaffold00046.170 0.8798939029699926 100