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  5. AMTR_s00021p00189630

AMTR_s00021p00189630 (AtRABA1f, RABA1f,...)


Aliases : AtRABA1f, RABA1f, evm_27.TU.AmTr_v1.0_scaffold00021.150

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00189630
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Adi_g078037 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g078039 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04605 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01612 RABA2b,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g42193 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09606 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Cre03.g189250 ATRABA2A,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Dcu_g40522 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00471 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014181001 ATRABA1B, RAB11, RABA1b Ras-related protein RIC2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
LOC_Os03g60870.1 RABA2b,... A-class RAB GTPase 0.04 OrthoFinder output from all 47 species
LOC_Os05g01480.1 ATRABA2A,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Len_g16053 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g37171 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05986 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18286 AtRABA5d, RABA5d A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g02294 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27361 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20309 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08711 ATRABA5C, ARA4,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0007264 small GTPase mediated signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!