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  5. AMTR_s00021p00147600

AMTR_s00021p00147600 (SIP1,...)


Aliases : SIP1, evm_27.TU.AmTr_v1.0_scaffold00021.101

Description : Carbohydrate metabolism.raffinose family oligosaccharide biosynthesis.raffinose synthase


Gene families : OG0000999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00147600
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT5G40390 SIP1 Raffinose synthase family protein 0.03 OrthoFinder output from all 47 species
Adi_g011334 SIP2, AtSIP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38472 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69980.t1 SIP1, Aspi01Gene69980 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004662001 SIP2, AtSIP2 Probable galactinol--sucrose galactosyltransferase 2... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59430.2 SIP2, AtSIP2,... raffinose alpha-galactosidase 0.03 OrthoFinder output from all 47 species
Msp_g05372 SIP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33650 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031054_P001 DIN10, Zm00001e031054 galactinol-sucrose galactosyltransferase 0.03 OrthoFinder output from all 47 species
Zm00001e033100_P002 SIP2, AtSIP2,... raffinose alpha-galactosidase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 76 694
No external refs found!