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Aliases : evm_27.TU.AmTr_v1.0_scaffold00020.3
Description : 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G23700 | No alias | Nucleic acid-binding proteins superfamily | 0.14 | OrthoFinder output from all 47 species | |
| Aev_g03265 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g04569 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Als_g08286 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g01702 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aop_g27368 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aspi01Gene14361.t1 | Aspi01Gene14361 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0534.g076070 | No alias | not classified & original description: CDS=250-1461 | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g16549 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G080900.1 | Ceric.11G080900 | not classified & original description: pacid=50596374... | 0.08 | OrthoFinder output from all 47 species | |
| Cre03.g148950 | No alias | 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g02753 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g03799 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dde_g07957 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ehy_g01039 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031632001 | No alias | 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea | 0.07 | OrthoFinder output from all 47 species | |
| Gb_13624 | No alias | 30S ribosomal protein S1, chloroplastic OS=Spinacia... | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os03g62780.1 | LOC_Os03g62780 | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| Len_g12635 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g01511 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| MA_37826g0010 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Mp6g19820.1 | No alias | 30S ribosomal protein S1, chloroplastic OS=Spinacia... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g04843 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g02820 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g26841 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g40824 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g12492 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g01274 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g05108 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0160.g023855 | No alias | not classified & original description: CDS=194-1321 | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g18454 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g30081 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g39278 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo96268 | No alias | 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g11144 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Tin_g18988 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g23785 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e006347_P003 | Zm00001e006347 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| BP | GO:0017038 | protein import | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |