AMTR_s00019p00031370 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.10

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase

Gene families : OG0008809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008809_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00019p00031370
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
LOC_Os01g43490.1	LOC_Os01g43490	Polygalacturonase OS=Prunus persica...	0.02	OrthoFinder output from all 47 species
Solyc02g067630.3.1	Solyc02g067630	Polygalacturonase OS=Prunus persica...	0.02	OrthoFinder output from all 47 species
Solyc02g067640.3.1	Solyc02g067640	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc08g014540.1.1	Solyc08g014540	Polygalacturonase OS=Prunus persica...	0.04	OrthoFinder output from all 47 species
Solyc12g019120.2.1	Solyc12g019120	Polygalacturonase OS=Prunus persica...	0.04	OrthoFinder output from all 47 species
Solyc12g019180.2.1	Solyc12g019180	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc12g096730.3.1	Solyc12g096730	Polygalacturonase OS=Prunus persica...	0.01	OrthoFinder output from all 47 species
Solyc12g096740.1.1	Solyc12g096740	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc12g096750.2.1	Solyc12g096750	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
CC	GO:0031227	obsolete intrinsic component of endoplasmic reticulum membrane	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	2	215

External Links

No external refs found!