AMTR_s00018p00168540 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.94

Description : DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00018p00168540
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT1G65070	No alias	DNA mismatch repair protein MutS, type 2	0.03	OrthoFinder output from all 47 species
Ala_g09056	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04468	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g11010	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene07212.t1	Aspi01Gene07212	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0068.g036437	No alias	not classified & original description: CDS=249-2714	0.05	OrthoFinder output from all 47 species
Cba_g24484	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.34G068900.1	Ceric.34G068900	not classified & original description: pacid=50624175...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.149	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g06609	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g12574	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g11218	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07894	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g12779	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_24817	No alias	DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os04g58410.1	LOC_Os04g58410	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os10g36530.1	LOC_Os10g36530	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Len_g03377	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g57835	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_263724g0010	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp2g11550.1	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.07	OrthoFinder output from all 47 species
Msp_g14305	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g32159	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g26063	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g15710	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19502	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g16765	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g59488	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g06740	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026113	No alias	not classified & original description: CDS=1-2874	0.02	OrthoFinder output from all 47 species
Sam_g13786	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16282	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo141299	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Smo421325	No alias	No description available	0.03	OrthoFinder output from all 47 species
Spa_g47688	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006512_P001	Zm00001e006512	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e012571_P001	Zm00001e012571	DNA mismatch repair protein MSH1, mitochondrial...	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0030976	thiamine pyrophosphate binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0050997	quaternary ammonium group binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	467	666

External Links

No external refs found!

AMTR_s00018p00168540 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation