- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.6
Description : F-box protein At2g27310 OS=Arabidopsis thaliana
Gene families : OG0001049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001049_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00018p00031290 | |
| Cluster | HCCA: Cluster_118 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G27310 | No alias | F-box family protein | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g04411 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g33061 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g01481 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g60927 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g04265 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g22907 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_01942 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_08961 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_11568 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_22367 | SLY2 | SLY-type gibberellin signal transducer. component F-box... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g10040.1 | SLY2, LOC_Os03g10040 | SLY-type gibberellin signal transducer. component F-box... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g33820.1 | LOC_Os04g33820 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os11g05660.1 | LOC_Os11g05660 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g06030.1 | LOC_Os12g06030 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_119267g0010 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.02 | OrthoFinder output from all 47 species | |
| MA_164016g0010 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.02 | OrthoFinder output from all 47 species | |
| MA_3236g0010 | SLY2 | SLY-type gibberellin signal transducer. component F-box... | 0.04 | OrthoFinder output from all 47 species | |
| MA_9868304g0010 | SLY1 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| Mp1g06600.1 | SLY1 | SLY-type gibberellin signal transducer. component F-box... | 0.01 | OrthoFinder output from all 47 species | |
| Mp5g06150.1 | No alias | SLY-type gibberellin signal transducer. component F-box... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g34044 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g06355 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g13441 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g18489 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g21785 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26122 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g28804 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g32241 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g11658 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g33760 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g12380 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g17370 | SLY1 | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g05167 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.02 | OrthoFinder output from all 47 species | |
| Smo80605 | No alias | Probable F-box protein At2g36090 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g068710.3.1 | Solyc11g068710 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g15092 | No alias | substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e001713_P001 | Zm00001e001713 | F-box protein At2g27310 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e009127_P001 | Zm00001e009127 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e014737_P001 | Zm00001e014737 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e022823_P002 | SLY1, Zm00001e022823 | SLY-type gibberellin signal transducer. component F-box... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040837_P001 | Zm00001e040837 | Probable F-box protein At2g36090 OS=Arabidopsis thaliana... | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| MF | GO:0009055 | electron transfer activity | IEP | HCCA |
| MF | GO:0015035 | protein-disulfide reductase activity | IEP | HCCA |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |