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  5. AMTR_s00016p00246090

AMTR_s00016p00246090 (Tudor1, AtTudor1,...)


Aliases : Tudor1, AtTudor1, TSN1, evm_27.TU.AmTr_v1.0_scaffold00016.281

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).stress granule.TSN ribonuclease


Gene families : OG0004117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00246090

Target Alias Description ECC score Gene Family Method Actions
AT5G61780 TSN2, Tudor2, AtTudor2 TUDOR-SN protein 2 0.05 OrthoFinder output from all 47 species
Azfi_s0022.g016015 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: CDS=1-3189 0.03 OrthoFinder output from all 47 species
Cba_g22914 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G032900.1 Tudor1,... mRNA endoribonuclease *(TSN) & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g04451 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01005677001 Tudor1, AtTudor1, TSN1 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Lfl_g16056 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.02 OrthoFinder output from all 47 species
Smo165776 Tudor1, AtTudor1, TSN1 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002999 Tudor 684 809
No external refs found!