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  5. AMTR_s00014p00250090

AMTR_s00014p00250090 (HAP13,...)


Aliases : HAP13, evm_27.TU.AmTr_v1.0_scaffold00014.130

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1M medium mu subunit


Gene families : OG0003200 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00014p00250090

Target Alias Description ECC score Gene Family Method Actions
AT1G60780 HAP13 Clathrin adaptor complexes medium subunit family protein 0.04 OrthoFinder output from all 47 species
Adi_g074255 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Aev_g12966 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020466 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Azfi_s0069.g036494 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Cba_g06963 HAP13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15881 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.5 HAP13 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Cre06.g262250 HAP13 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 47 species
Dcu_g08796 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
GSVIVT01004093001 HAP13 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
LOC_Os05g46550.1 HAP13, LOC_Os05g46550 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Lfl_g06990 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Mp1g15960.1 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Msp_g12532 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Ppi_g03776 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Smo91068 HAP13 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Solyc04g026360.3.1 HAP13, Solyc04g026360 AP-1 complex subunit mu-2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc04g026380.4.1 HAP13, Solyc04g026380 AP-1 complex subunit mu-2 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc05g013340.3.1 HAP13, Solyc05g013340 medium subunit mu of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species
Tin_g03338 HAP13 medium subunit mu of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Zm00001e020037_P003 HAP13, Zm00001e020037 AP-1 complex subunit mu-2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008653 lipopolysaccharide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009103 lipopolysaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 7 131
No external refs found!