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  5. AMTR_s00013p00091760

AMTR_s00013p00091760 (AtRH36, SWA3, RH36,...)


Aliases : AtRH36, SWA3, RH36, evm_27.TU.AmTr_v1.0_scaffold00013.42

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA3/RH36 assembly factor


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00091760

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene46398.t1 Aspi01Gene46398 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008479 queuine tRNA-ribosyltransferase activity IEP HCCA
BP GO:0008616 queuosine biosynthetic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009163 nucleoside biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042455 ribonucleoside biosynthetic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046116 queuosine metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 316 392
IPR011545 DEAD/DEAH_box_helicase_dom 77 242
No external refs found!