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  5. AMTR_s00012p00251030

AMTR_s00012p00251030 (APUM2, PUM2,...)


Aliases : APUM2, PUM2, evm_27.TU.AmTr_v1.0_scaffold00012.251

Description : Pumilio homolog 2 OS=Arabidopsis thaliana


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00012p00251030
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.06 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023994 PUM5, APUM5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079535 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10980 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30394 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05563.t1 APUM4, PUM4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.01 OrthoFinder output from all 47 species
Dac_g04724 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39769 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016236001 APUM4, PUM4 Pumilio homolog 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01024918001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_23280 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_30040 APUM6, PUM6 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_10434828g0010 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g05905 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05799 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0253.g026782 APUM2, PUM2 not classified & original description: CDS=660-3872 0.03 OrthoFinder output from all 47 species
Sam_g10568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Tin_g16990 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 286 681
IPR001313 Pumilio_RNA-bd_rpt 757 788
IPR001313 Pumilio_RNA-bd_rpt 720 752
IPR001313 Pumilio_RNA-bd_rpt 829 862
IPR001313 Pumilio_RNA-bd_rpt 685 717
IPR001313 Pumilio_RNA-bd_rpt 951 977
IPR001313 Pumilio_RNA-bd_rpt 871 896
IPR001313 Pumilio_RNA-bd_rpt 795 826
No external refs found!