Sequence Description Alias PCC hrr AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase ATEDR1, EDR1, evm_27.TU.AmTr_v1.0_scaffold00004.8 0.9431832460267028 1 AMTR_s00066p00174610 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00066.206 0.9125442499671347 27 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP, evm_27.TU.AmTr_v1.0_scaffold00009.205 0.904507071112366 5 AMTR_s00055p00173600 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL5, evm_27.TU.AmTr_v1.0_scaffold00055.90 0.9040696809076593 4 AMTR_s00046p00153230 evm_27.TU.AmTr_v1.0_scaffold00046.81 0.9010020472937409 11 AMTR_s00041p00031550 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor evm_27.TU.AmTr_v1.0_scaffold00041.15 0.9007523000547963 23 AMTR_s00051p00079490 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPR1, evm_27.TU.AmTr_v1.0_scaffold00051.29 0.900350204881498 7 AMTR_s00071p00188270 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF3 component ATUPF3, UPF3, evm_27.TU.AmTr_v1.0_scaffold00071.198 0.9002077639039515 8 AMTR_s00087p00057840 evm_27.TU.AmTr_v1.0_scaffold00087.12 0.8983558541827598 9 AMTR_s00027p00205150 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00027.73 0.8981396970174641 39 AMTR_s00029p00021500 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.4 0.8973910140948722 11 AMTR_s00072p00117380 Cell division control protein 48 homolog D OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.59 0.8967122434235953 12 AMTR_s00006p00248360 Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG, evm_27.TU.AmTr_v1.0_scaffold00006.138 0.8957114048108166 13 AMTR_s00068p00188520 MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana NSL1, evm_27.TU.AmTr_v1.0_scaffold00068.151 0.8934838462221014 33 AMTR_s00002p00140630 Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4G component CUM2, EIF4G, evm_27.TU.AmTr_v1.0_scaffold00002.103 0.8895967598582559 32 AMTR_s00037p00128200 evm_27.TU.AmTr_v1.0_scaffold00037.54 0.8883372743669241 44 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.8871299828397493 32 AMTR_s00025p00181800 Pumilio homolog 5 OS=Arabidopsis thaliana PUM5, APUM5, evm_27.TU.AmTr_v1.0_scaffold00025.219 0.8867631094801017 36 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase TIP1, evm_27.TU.AmTr_v1.0_scaffold00033.26 0.8865332021832929 94 AMTR_s00002p00269760 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.558 0.8863990647330102 20 AMTR_s00032p00053220 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein ETR, ETR1, EIN1, AtETR1, evm_27.TU.AmTr_v1.0_scaffold00032.33 0.8832117345763543 22 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.8829110558425334 64 AMTR_s00049p00063500 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component ATB' GAMMA, evm_27.TU.AmTr_v1.0_scaffold00049.40 0.8826548302706286 24 AMTR_s00085p00052820 Cell division cycle protein 48 homolog OS=Glycine max CDC48A, CDC48, ATCDC48, evm_27.TU.AmTr_v1.0_scaffold00085.22 0.882473919492385 25 AMTR_s00009p00232070 Protein modification.peptide maturation.endomembrane system.SPP signal peptidase SPPL2, ATSPPL2, evm_27.TU.AmTr_v1.0_scaffold00009.185 0.8820955830245403 38 AMTR_s00007p00182220 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component evm_27.TU.AmTr_v1.0_scaffold00007.146 0.8808865110370735 27 AMTR_s00053p00015490 Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type) ATCNGC1, CNGC1, evm_27.TU.AmTr_v1.0_scaffold00053.2 0.8789675644381958 31 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8788997332570061 32 AMTR_s00106p00091710 evm_27.TU.AmTr_v1.0_scaffold00106.60 0.8785128943592154 43 AMTR_s00090p00148990 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor SYD, CHR3, evm_27.TU.AmTr_v1.0_scaffold00090.83 0.8761727750686907 61 AMTR_s00095p00126700 evm_27.TU.AmTr_v1.0_scaffold00095.83 0.8758355960631562 37 AMTR_s00057p00189360 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.205 0.8757577450890522 50 AMTR_s00056p00074670 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP35 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00056.54 0.8754744571894395 40 AMTR_s00093p00085820 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica AML5, ML5, evm_27.TU.AmTr_v1.0_scaffold00093.23 0.8741047659664013 42 AMTR_s00059p00072490 Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component CHB3, ATSWI3D, evm_27.TU.AmTr_v1.0_scaffold00059.47 0.8737740803686957 49 AMTR_s00056p00054070 Protein unc-13 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.34 0.8735787415231305 44 AMTR_s00037p00185170 evm_27.TU.AmTr_v1.0_scaffold00037.91 0.8732706186033214 45 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8732102329226495 89 AMTR_s00048p00066880 Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana NHL8, evm_27.TU.AmTr_v1.0_scaffold00048.27 0.8728388122927436 63 AMTR_s00077p00082680 RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-VAL transcription factor HSL1, VAL2, HSI2-L1, evm_27.TU.AmTr_v1.0_scaffold00077.66 0.871445334449899 100 AMTR_s00303p00010520 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group MPK20, ATMPK20, evm_27.TU.AmTr_v1.0_scaffold00303.1 0.871228906269871 73 AMTR_s00103p00063820 Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana AXR4, RGR, RGR1, evm_27.TU.AmTr_v1.0_scaffold00103.32 0.8702895294361398 52 AMTR_s00045p00233670 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.PRL1/MAC2 component evm_27.TU.AmTr_v1.0_scaffold00045.345 0.8689952736089748 55 AMTR_s00002p00253550 Protein modification.phosphorylation.CMGC kinase superfamily.SRPK kinase evm_27.TU.AmTr_v1.0_scaffold00002.376 0.8681162862636047 57 AMTR_s00029p00096200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component evm_27.TU.AmTr_v1.0_scaffold00029.89 0.8677461513540037 59 AMTR_s00009p00216420 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM, evm_27.TU.AmTr_v1.0_scaffold00009.153 0.8674712271551009 61 AMTR_s00135p00021060 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP16, evm_27.TU.AmTr_v1.0_scaffold00135.4 0.8670123147390538 63 AMTR_s00019p00246290 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.formylglycinamidine RN synthase PUR4, evm_27.TU.AmTr_v1.0_scaffold00019.386 0.8669279693443739 64 AMTR_s00065p00122030 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.72 0.8665497945012287 67 AMTR_s00149p00102010 evm_27.TU.AmTr_v1.0_scaffold00149.85 0.8652072609300644 71 AMTR_s00155p00079840 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF30/Yth1 component CPSF30, ATCPSF30, evm_27.TU.AmTr_v1.0_scaffold00155.52 0.8651256160717367 72 AMTR_s00069p00127620 evm_27.TU.AmTr_v1.0_scaffold00069.88 0.8649555776310363 89 AMTR_s00163p00018060 Coenzyme metabolism.molybdenum cofactor synthesis.molybdenum ion insertion.bifunctional molybdopterin adenylyltransferase and molybdenumtransferase (CNX1) CNX1, CHL6, B73, CNX, SIR4, evm_27.TU.AmTr_v1.0_scaffold00163.5 0.864810753413289 75 AMTR_s00065p00140150 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor evm_27.TU.AmTr_v1.0_scaffold00065.96 0.8644171896566356 77 AMTR_s00010p00228130 UBP1-associated protein 2A OS=Arabidopsis thaliana UBA2A, evm_27.TU.AmTr_v1.0_scaffold00010.256 0.8610819107572213 84 AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.8604856256911804 87 AMTR_s00066p00134410 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.129 0.8599866642311913 89 AMTR_s00146p00059560 Cytoskeleton.microfilament network.myosin microfilament-based motor protein activities.class XI myosin ATXIK, XI-17, XIK, evm_27.TU.AmTr_v1.0_scaffold00146.36 0.8591035079954491 90 AMTR_s00122p00140700 Solute transport.carrier-mediated transport.MFS superfamily.NTT ATP:ADP antiporter NTT1, ATNTT1, evm_27.TU.AmTr_v1.0_scaffold00122.77 0.8576354424897118 93 AMTR_s00071p00043690 BTB/POZ domain-containing protein At2g13690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.23 0.8572670829941966 95 AMTR_s00021p00136760 Transcription factor GTE4 OS=Arabidopsis thaliana GTE4, evm_27.TU.AmTr_v1.0_scaffold00021.92 0.8559057298047287 98 AMTR_s00058p00182510 CASP-like protein 4A3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.173 0.8552562911382258 100