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  5. AMTR_s00011p00262800

AMTR_s00011p00262800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.199

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.SAWADEE transcription factor


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00011p00262800
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g043959 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Als_g01529 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene41381.t1 Aspi01Gene41381 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z192200.1 Ceric.1Z192200 RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Mp3g06860.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.04 OrthoFinder output from all 47 species
Msp_g08937 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Pir_g03010 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Pir_g12048 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g06316 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011197 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012111 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Solyc10g007130.4.1 Solyc10g007130 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species
Zm00001e033896_P001 Zm00001e033896 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 13 75
No external refs found!