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  5. AMTR_s00010p00262550

AMTR_s00010p00262550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.471

Description : Extracellular ribonuclease LE OS=Solanum lycopersicum


Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00262550
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00084600 evm_27.TU.AmTr_v1... Ribonuclease 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G14210 No alias Ribonuclease T2 family protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene00279.t1 ATRNS1, RNS1,... T2-type RNase *(RNS) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G006700.1 ATRNS1, RNS1,... T2-type RNase *(RNS) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G011400.1 ATRNS1, RNS1,... T2-type RNase *(RNS) & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01010088001 No alias Extracellular ribonuclease LE OS=Solanum lycopersicum 0.04 OrthoFinder output from all 47 species
Gb_30836 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_41024 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os07g43670.1 ATRNS1, RNS1,... Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g33710.1 RNS3, LOC_Os08g33710 Extracellular ribonuclease LE OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species
LOC_Os09g36700.1 LOC_Os09g36700 Ribonuclease 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_4032367g0010 RNS3 Ribonuclease 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_95383g0020 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g007940.3.1 ATRNS1, RNS1,... Intracellular ribonuclease LX OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Solyc05g007950.4.1 ATRNS1, RNS1,... Extracellular ribonuclease LE OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Spa_g45943 ATRNS1, RNS1 T2-type RNase *(RNS) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0033897 ribonuclease T2 activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005231 excitatory extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030288 outer membrane-bounded periplasmic space IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0031227 obsolete intrinsic component of endoplasmic reticulum membrane IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0042597 periplasmic space IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001568 RNase_T2-like 23 208
No external refs found!