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  5. AMTR_s00010p00234800

AMTR_s00010p00234800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.279

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mTERF splicing factor


Gene families : OG0003109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00234800

Target Alias Description ECC score Gene Family Method Actions
AT2G44020 No alias Mitochondrial transcription termination factor family protein 0.03 OrthoFinder output from all 47 species
Ceric.13G090900.1 Ceric.13G090900 mTERF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01011061001 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_36311 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.03 OrthoFinder output from all 47 species
Len_g29674 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04879 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_15876g0010 No alias transcription factor (mTERF). mTERF4 plastidial RNA... 0.03 OrthoFinder output from all 47 species
Tin_g07653 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023745_P001 Zm00001e023745 transcription factor (mTERF). mTERF mitochondrial RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 257 602
No external refs found!