AMTR_s00010p00122680 (WOX1,...)

Aliases : WOX1, evm_27.TU.AmTr_v1.0_scaffold00010.77

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.WOX transcription factor

Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00010p00122680

Target	Alias	Description	ECC score	Gene Family Method
AT2G01500	PFS2, HOS9, WOX6	Homeodomain-like superfamily protein	0.02	OrthoFinder output from all 47 species
AT2G28610	WOX3, PRS1, PRS	Homeodomain-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G33880	STIP, HB-3, WOX9	homeobox-3	0.03	OrthoFinder output from all 47 species
Adi_g077524	STPL, WOX8	WOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g63510.1	WOX5, LOC_Os01g63510	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
LOC_Os04g56780.1	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Solyc02g077390.2.1	STIP, HB-3,...	transcription factor (WOX)	0.06	OrthoFinder output from all 47 species
Solyc11g072770.2.1	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species
Zm00001e006644_P002	WUS, PGA6, WUS1,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e009121_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
Zm00001e019245_P001	WOX5, Zm00001e019245	transcription factor (WOX)	0.1	OrthoFinder output from all 47 species
Zm00001e024169_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.04	OrthoFinder output from all 47 species
Zm00001e024170_P001	Zm00001e024170	WUSCHEL-related homeobox 3B OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Zm00001e028720_P001	WOX5, Zm00001e028720	transcription factor (WOX)	0.05	OrthoFinder output from all 47 species
Zm00001e029534_P001	WOX3, PRS1, PRS,...	transcription factor (WOX)	0.02	OrthoFinder output from all 47 species
Zm00001e032433_P003	STIP, HB-3,...	transcription factor (WOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	83	142

External Links

No external refs found!

AMTR_s00010p00122680 (WOX1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation