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  5. AMTR_s00009p00257290

AMTR_s00009p00257290 (NF-YC3,...)


Aliases : NF-YC3, evm_27.TU.AmTr_v1.0_scaffold00009.293

Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YC component


Gene families : OG0001038 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001038_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00257290

Target Alias Description ECC score Gene Family Method Actions
AT1G56170 NF-YC2, ATHAP5B, HAP5B nuclear factor Y, subunit C2 0.06 OrthoFinder output from all 47 species
Aev_g06656 HAP5A, NF-YC1, ATHAP5A component *(NF-YC) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Aspi01Gene23954.t1 NF-YC2, ATHAP5B,... component *(NF-YC) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Dde_g01367 HAP5A, NF-YC1, ATHAP5A component *(NF-YC) of NF-Y transcription factor complex... 0.03 OrthoFinder output from all 47 species
Gb_13087 NF-YC2, ATHAP5B, HAP5B component NF-YC of NF-Y transcription factor complex 0.06 OrthoFinder output from all 47 species
LOC_Os04g58680.1 NF-YC2, ATHAP5B,... component NF-YC of NF-Y transcription factor complex 0.11 OrthoFinder output from all 47 species
MA_10163039g0010 HAP5A, NF-YC1, ATHAP5A component NF-YC of NF-Y transcription factor complex 0.03 OrthoFinder output from all 47 species
MA_164507g0010 HAP5A, NF-YC1, ATHAP5A component NF-YC of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Pp3c9_5650V3.1 NF-YC2, ATHAP5B,... nuclear factor Y, subunit C4 0.01 OrthoFinder output from all 47 species
Solyc03g111450.3.1 HAP5A, NF-YC1,... component NF-YC of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e034481_P001 NF-YC3, Zm00001e034481 component NF-YC of NF-Y transcription factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 72 135
No external refs found!