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  5. AMTR_s00007p00264470

AMTR_s00007p00264470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.349

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00264470
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00206660 evm_27.TU.AmTr_v1... Pectinesterase QRT1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G07430 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g39532 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07992 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16751 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20021 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g56742 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g58922 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24083.t2 Aspi01Gene24083 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G007700.1 Ceric.11G007700 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.24G024700.1 Ceric.24G024700 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dac_g17627 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11350 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42904 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44261 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51244 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12103 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12393 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15499 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01028170001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Len_g15122 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428610g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Nbi_g08012 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13021 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14686 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30255 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21379 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14779 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31507 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015880 No alias pectin methylesterase & original description: CDS=354-1487 0.03 OrthoFinder output from all 47 species
Smo101090 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Spa_g10100 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g41355 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49902 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g54581 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09242 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19866 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20074 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 13 196
No external refs found!