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  5. AMTR_s00004p00118340

AMTR_s00004p00118340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.101

No description available


Gene families : OG0006037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00118340

Target Alias Description ECC score Gene Family Method Actions
AT5G17930 No alias MIF4G domain-containing protein / MA3 domain-containing protein 0.03 OrthoFinder output from all 47 species
Cre09.g415200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g02977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g12210.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Sam_g25519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g097280.4.1 Solyc03g097280 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004174 electron-transferring-flavoprotein dehydrogenase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006278 RNA-templated DNA biosynthetic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016649 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 326 530
IPR003891 Initiation_fac_eIF4g_MI 618 719
No external refs found!