AMTR_s00003p00168720 (emb1138,...)

Aliases : emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00003p00168720

Target	Alias	Description	ECC score	Gene Family Method
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.09	OrthoFinder output from all 47 species
Adi_g055951	emb1138	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g079817	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ala_g22353	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Als_g07437	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Als_g26679	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.08	OrthoFinder output from all 47 species
Aop_g04482	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene57148.t1	emb1138, Aspi01Gene57148	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0027.g023578	emb1138	not classified & original description: CDS=239-2545	0.05	OrthoFinder output from all 47 species
Azfi_s0166.g054407	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.1	OrthoFinder output from all 47 species
Azfi_s0173.g055880	PRH75	not classified & original description: CDS=321-2342	0.02	OrthoFinder output from all 47 species
Cba_g11616	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ceric.05G054100.1	emb1138, Ceric.05G054100	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Cre17.g727700	emb1138	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Dac_g12671	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g39360	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Dde_g04423	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01031360001	emb1138	RNA processing.organelle machineries.RNA...	0.08	OrthoFinder output from all 47 species
Gb_04849	emb1138	RH3 plastidial RNA basal splicing factor	0.08	OrthoFinder output from all 47 species
Gb_35745	emb1138	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g61220.1	emb1138, LOC_Os03g61220	RH3 plastidial RNA basal splicing factor	0.05	OrthoFinder output from all 47 species
Len_g12708	emb1138	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Len_g23119	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Len_g56603	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g10151	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Mp3g17170.1	emb1138	RH3 plastidial RNA basal splicing factor. RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Msp_g07724	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.08	OrthoFinder output from all 47 species
Nbi_g06285	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ore_g29256	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Pir_g19704	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g13008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Pp3c2_2520V3.1	emb1138, Pp3c2_2520	DEAD box RNA helicase (RH3)	0.01	OrthoFinder output from all 47 species
Ppi_g43098	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Sam_g09733	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Smo10677	emb1138	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
Smo99603	emb1138	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Solyc08g042050.3.1	emb1138, Solyc08g042050	RH3 plastidial RNA basal splicing factor	0.06	OrthoFinder output from all 47 species
Spa_g06691	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Spa_g17328	emb1138	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g40629	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g07132	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e006243_P001	emb1138, Zm00001e006243	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
Zm00001e011716_P001	emb1138, Zm00001e011716	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006772	thiamine metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009228	thiamine biosynthetic process	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034309	primary alcohol biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012562	GUCT	553	654
IPR001878	Znf_CCHC	748	764
IPR011545	DEAD/DEAH_box_helicase_dom	152	321
IPR001650	Helicase_C	395	466

External Links

No external refs found!

AMTR_s00003p00168720 (emb1138,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation