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  5. AMTR_s00002p00271330

AMTR_s00002p00271330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.622

Description : Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana


Gene families : OG0001619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00271330

Target Alias Description ECC score Gene Family Method Actions
Adi_g021765 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Aev_g13381 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene23495.t1 Aspi01Gene23495 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G037600.1 Ceric.05G037600 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G000900.1 Ceric.36G000900 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Gb_41499 No alias ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
LOC_Os01g39310.1 RHD3, LOC_Os01g39310 ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
Lfl_g04180 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Ore_g15405 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Smo73603 RHD3 Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Solyc03g121590.3.1 RHD3, Solyc03g121590 ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
Zm00001e027781_P001 RHD3, Zm00001e027781 ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008803 RHD3/Sey1 43 768
No external refs found!