Sequence Description Alias PCC hrr AMTR_s00090p00083520 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.29 0.9740970470693269 1 AMTR_s00049p00115800 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG30, ATX2, evm_27.TU.AmTr_v1.0_scaffold00049.91 0.9677621341642053 2 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.9512166456246041 21 AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.949190073651054 12 AMTR_s00024p00070750 evm_27.TU.AmTr_v1.0_scaffold00024.29 0.9472100620328745 8 AMTR_s00111p00150590 Cell wall.callose.callose synthase ATGSL08, ATGSL8, GSL08, GSL8, CHOR, evm_27.TU.AmTr_v1.0_scaffold00111.135 0.9457550763462981 8 AMTR_s00049p00011400 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.2 0.9455902561605564 14 AMTR_s00002p00043100 Vesicle trafficking.target membrane tethering.COG (Conserved-Oligomeric Golgi) complex.COG6 component evm_27.TU.AmTr_v1.0_scaffold00002.17 0.945490942639324 8 AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9436659761689189 53 AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase HEN2, evm_27.TU.AmTr_v1.0_scaffold00025.254 0.9429060229767156 25 AMTR_s00119p00132020 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class IV ARF-GAP protein ZIGA4, AGD14, evm_27.TU.AmTr_v1.0_scaffold00119.107 0.9426592567350274 11 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9408959777040121 21 AMTR_s00153p00060550 Probable methyltransferase PMT23 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00153.27 0.9400054224310659 13 AMTR_s00013p00247130 Protein modification.O-linked glycosylation.serine/threonine O-linked glycosylation.SEC N-acetylglucosamine transferase SEC, evm_27.TU.AmTr_v1.0_scaffold00013.214 0.9397294919272443 17 AMTR_s00009p00251110 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease TPP2, evm_27.TU.AmTr_v1.0_scaffold00009.258 0.9386923326384418 32 AMTR_s00065p00048130 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.24 0.9382412042841584 37 AMTR_s00045p00073910 Cell wall.hemicellulose.heteromannan.synthesis.mannan synthesis accessory protein evm_27.TU.AmTr_v1.0_scaffold00045.63 0.9381637719992196 17 AMTR_s00010p00217580 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00010.224 0.9380352736436894 18 AMTR_s00059p00193620 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase MGO1, TOP1, TOP1ALPHA, evm_27.TU.AmTr_v1.0_scaffold00059.214 0.9379586390101845 21 AMTR_s00002p00261540 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.453 0.9375632243773273 34 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9367438193042763 45 AMTR_s00057p00150120 evm_27.TU.AmTr_v1.0_scaffold00057.136 0.9360084557296492 29 AMTR_s00059p00178020 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC3 component SEC3A, evm_27.TU.AmTr_v1.0_scaffold00059.189 0.9359779385721944 44 AMTR_s00133p00115730 Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana AAE18, evm_27.TU.AmTr_v1.0_scaffold00133.60 0.9356308195152868 24 AMTR_s00037p00070040 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00037.19 0.9345186663642926 57 AMTR_s00002p00269010 evm_27.TU.AmTr_v1.0_scaffold00002.545 0.934362608870036 26 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9333091617324233 29 AMTR_s00003p00202580 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD4, evm_27.TU.AmTr_v1.0_scaffold00003.190 0.9330578703560832 37 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase MKK3, ATMKK3, evm_27.TU.AmTr_v1.0_scaffold00083.35 0.932151137010126 66 AMTR_s00155p00075220 evm_27.TU.AmTr_v1.0_scaffold00155.49 0.9315475582024416 30 AMTR_s00090p00109700 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.ketoacyl-ACP synthase (mtKAS) evm_27.TU.AmTr_v1.0_scaffold00090.50 0.9301970805599203 31 AMTR_s00013p00237060 Nucleotide metabolism.pyrimidines.salvage pathway.bifunctional uridine kinase and uracil phosphoribosyltransferase UK/UPRT1, UKL1, ATUK/UPRT1, evm_27.TU.AmTr_v1.0_scaffold00013.193 0.9300334782662948 32 AMTR_s00036p00195200 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00036.108 0.9295516469161393 33 AMTR_s00034p00133850 evm_27.TU.AmTr_v1.0_scaffold00034.40 0.929280674192287 34 AMTR_s00041p00138020 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP160 scaffold nucleoporin SAR1, ATNUP160, NUP160, evm_27.TU.AmTr_v1.0_scaffold00041.97 0.9290945992719258 41 AMTR_s00153p00051720 evm_27.TU.AmTr_v1.0_scaffold00153.23 0.9290928218761773 36 AMTR_s00025p00230510 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.334 0.9280944300120839 37 AMTR_s00119p00089670 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin GC6, MAG4, evm_27.TU.AmTr_v1.0_scaffold00119.69 0.9280247719084539 38 AMTR_s00111p00067270 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00111.37 0.9275791859886031 39 AMTR_s00049p00091690 EMB2423, evm_27.TU.AmTr_v1.0_scaffold00049.62 0.926318013878561 40 AMTR_s00067p00129330 Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana emb1974, evm_27.TU.AmTr_v1.0_scaffold00067.111 0.9256437833652483 55 AMTR_s00057p00025530 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.9 0.925214349364469 42 AMTR_s00004p00046450 RNA processing.RNA decay.deadenylation-dependent mechanism.XRN4 exoribonuclease EIN5, AIN1, XRN4, ATXRN4, evm_27.TU.AmTr_v1.0_scaffold00004.30 0.9250915458689337 43 AMTR_s00109p00074660 Protein modification.lipidation.Glycophosphatidylinositol (GPI)-anchor addition.GPI pre-assembly.GPI N-acetylglucosamine transferase complex.PIG-A component SETH2, evm_27.TU.AmTr_v1.0_scaffold00109.57 0.9249493195599656 44 AMTR_s00081p00160620 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component evm_27.TU.AmTr_v1.0_scaffold00081.69 0.9248096386339774 62 AMTR_s00036p00170130 Nudix hydrolase 3 OS=Arabidopsis thaliana atnudt3, NUDT3, evm_27.TU.AmTr_v1.0_scaffold00036.84 0.924708089224167 46 AMTR_s00046p00229830 External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.SOS3-SOS2 signalling.SOS2 kinase ATCIPK8, CIPK8, PKS11, SnRK3.13, evm_27.TU.AmTr_v1.0_scaffold00046.173 0.9246430022450843 48 AMTR_s00055p00041510 Histidine kinase 1 OS=Arabidopsis thaliana AHK1, HK1, ATHK1, evm_27.TU.AmTr_v1.0_scaffold00055.12 0.9244118965475684 76 AMTR_s00001p00226660 Protein modification.phosphorylation.AGC kinase superfamily.PDK kinase PDK1, ATPDK1, evm_27.TU.AmTr_v1.0_scaffold00001.238 0.9242536489676986 50 AMTR_s00044p00170650 evm_27.TU.AmTr_v1.0_scaffold00044.189 0.9240435793618166 51 AMTR_s00163p00014030 Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00163.1 0.9237901360724879 53 AMTR_s00066p00163770 ELF9, evm_27.TU.AmTr_v1.0_scaffold00066.177 0.9237351506846089 54 AMTR_s00044p00041520 evm_27.TU.AmTr_v1.0_scaffold00044.15 0.9237266934531418 77 AMTR_s00090p00135570 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF6 component ATTAF6, TAF6, TAFII59, evm_27.TU.AmTr_v1.0_scaffold00090.68 0.9236696801172203 56 AMTR_s00017p00239150 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana MAA3, evm_27.TU.AmTr_v1.0_scaffold00017.210 0.9230269608973091 68 AMTR_s00059p00168200 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-gamma component EIF2 GAMMA, evm_27.TU.AmTr_v1.0_scaffold00059.161 0.9227621934249045 58 AMTR_s00037p00181430 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.small component (AXR1/AXL) AXR1, evm_27.TU.AmTr_v1.0_scaffold00037.87 0.9227112440905672 59 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana UBP13, evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9222447101417851 60 AMTR_s00029p00121120 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class I ARF-GAP protein AGD2, evm_27.TU.AmTr_v1.0_scaffold00029.135 0.9220147434256135 61 AMTR_s00110p00155630 evm_27.TU.AmTr_v1.0_scaffold00110.131 0.9217770327194059 62 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9217432470048278 63 AMTR_s00032p00047690 evm_27.TU.AmTr_v1.0_scaffold00032.26 0.9214510806928964 64 AMTR_s00002p00214180 Protein modification.N-linked glycosylation.dolichol-phosphate-linked oligosaccharide precursor assembly.ALG12 alpha-1,6 mannosyltransferase EBS4, ALG12, evm_27.TU.AmTr_v1.0_scaffold00002.227 0.9213954362590918 65 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9212400994965865 86 AMTR_s00066p00129430 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00066.122 0.9208941154901492 67 AMTR_s00072p00167120 Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.115 0.9207634897293554 68 AMTR_s00137p00063430 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00137.24 0.9206991208370509 86 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9205989415868168 90 AMTR_s00171p00062850 evm_27.TU.AmTr_v1.0_scaffold00171.47 0.9204342806784669 71 AMTR_s00023p00029140 RNA biosynthesis.siRNA biogenesis.CLSY1/2 RDR2-polymerase accessory protein CHR42, evm_27.TU.AmTr_v1.0_scaffold00023.7 0.9200272464940248 73 AMTR_s00030p00083820 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii LRS1, evm_27.TU.AmTr_v1.0_scaffold00030.33 0.9198536684165944 78 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.9189253796228098 77 AMTR_s00092p00120720 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-v-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00092.84 0.9189241354283816 78 AMTR_s00025p00208510 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN13 regulatory component RPN13, evm_27.TU.AmTr_v1.0_scaffold00025.272 0.9188079060299428 79 AMTR_s00044p00141100 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOC4 assembly factor EMB2762, evm_27.TU.AmTr_v1.0_scaffold00044.137 0.9187385605392818 80 AMTR_s00048p00165310 Protein BCCIP homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.119 0.9184888759437977 81 AMTR_s00060p00170530 evm_27.TU.AmTr_v1.0_scaffold00060.107 0.9184172601600351 82 AMTR_s00044p00153760 Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.161 0.9180859114803227 83 AMTR_s00004p00133120 Protein modification.phosphorylation.TSL/TOUSLED kinase TSL, evm_27.TU.AmTr_v1.0_scaffold00004.128 0.9178293939212434 84 AMTR_s00055p00198590 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase SIK1, evm_27.TU.AmTr_v1.0_scaffold00055.138 0.917779582403313 85 AMTR_s00037p00154410 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.arabinogalactan proteins (AGPs).glycosylation.AGP beta-1,3-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00037.71 0.9174770625888989 86 AMTR_s00057p00019730 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP5 component emb1427, evm_27.TU.AmTr_v1.0_scaffold00057.4 0.9173633980906876 88 AMTR_s00008p00268620 Cell cycle.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.RAD17 checkpoint protein evm_27.TU.AmTr_v1.0_scaffold00008.241 0.9169049647811203 89 AMTR_s00020p00234520 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323, evm_27.TU.AmTr_v1.0_scaffold00020.106 0.9168536169410075 90 AMTR_s00068p00178640 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS18 component evm_27.TU.AmTr_v1.0_scaffold00068.135 0.9168359785676504 93 AMTR_s00149p00082440 evm_27.TU.AmTr_v1.0_scaffold00149.66 0.9164463932474167 92 AMTR_s00101p00067890 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00101.41 0.916324480491917 99 AMTR_s00009p00256630 Polyadenylate-binding protein 8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.289 0.9161185195653029 95 AMTR_s00058p00168420 Protein degradation.peptidase families.cysteine-type peptidase activities.SUMO-specific protease families.OTS protease OTS1, ULP1D, evm_27.TU.AmTr_v1.0_scaffold00058.153 0.915671679673922 97 AMTR_s00042p00136580 AtDNMT2, DNMT2, evm_27.TU.AmTr_v1.0_scaffold00042.33 0.9154753323952604 98 AMTR_s00140p00029580 RNA biosynthesis.transcriptional activation.PHD finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00140.6 0.9153121479112689 99 AMTR_s00056p00222190 RNA biosynthesis.transcriptional activation.HRT transcription factor ATET2, ET2, evm_27.TU.AmTr_v1.0_scaffold00056.223 0.9149092716178102 100