AMTR_s00002p00146270 (PDE318,...)

Aliases : PDE318, evm_27.TU.AmTr_v1.0_scaffold00002.110

Description : Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana

Gene families : OG0006383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006383_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00146270

Target	Alias	Description	ECC score	Gene Family Method
AT1G80770	PDE318	P-loop containing nucleoside triphosphate hydrolases...	0.04	OrthoFinder output from all 47 species
Adi_g021598	PDE318	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09822	PDE318	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022468001	PDE318	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_02848	PDE318	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os08g06230.1	PDE318, LOC_Os08g06230	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Mp7g04840.1	PDE318	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc09g090460.3.1	PDE318, Solyc09g090460	Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005381	iron ion transmembrane transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015093	ferrous iron transmembrane transporter activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
MF	GO:0046915	transition metal ion transmembrane transporter activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010674	NOG1_Rossman_fold_dom	313	370

External Links

No external refs found!

AMTR_s00002p00146270 (PDE318,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation