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  5. AMTR_s00001p00272520

AMTR_s00001p00272520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.536

No description available


Gene families : OG0001892 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001892_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00272520
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT3G50030 No alias ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 0.04 OrthoFinder output from all 47 species
Ala_g02396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60265.t1 Aspi01Gene60265 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g00995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009381001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os03g10980.1 LOC_Os03g10980 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g22878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g07163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g30340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g092783.1.1 Solyc02g092783 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g078170.2.1 Solyc04g078170 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Tin_g09753 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e000721_P001 Zm00001e000721 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005231 excitatory extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0030288 outer membrane-bounded periplasmic space IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
CC GO:0042597 periplasmic space IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!