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  5. AMTR_s00001p00269200

AMTR_s00001p00269200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.433

Description : RNA processing.RNA modification.uridylation.URT1 uridylyltransferase


Gene families : OG0004237 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004237_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00269200
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT2G45620 No alias Nucleotidyltransferase family protein 0.03 OrthoFinder output from all 47 species
Als_g52386 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04716 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.102 No alias No description available 0.01 OrthoFinder output from all 47 species
Lfl_g02349 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.05 OrthoFinder output from all 47 species
Mp8g15550.1 No alias uridylyltransferase (URT1) 0.03 OrthoFinder output from all 47 species
Nbi_g03186 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12618 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35966 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15990 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002058 PAP_assoc 705 763
No external refs found!