AMTR_s00001p00244170 (HCHIB, B-CHI,...)

Aliases : HCHIB, B-CHI, ATHCHIB, PR-3, PR3, CHI-B, evm_27.TU.AmTr_v1.0_scaffold00001.287

Description : Chitinase 3 OS=Oryza sativa subsp. japonica

Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00244170

Target	Alias	Description	ECC score	Gene Family Method
AT2G43580	No alias	Chitinase family protein	0.04	OrthoFinder output from all 47 species
Adi_g017574	ATEP3, EP3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g26045	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25708	ATEP3, EP3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g36519	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g18707	ATEP3, EP3,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g35678	ATEP3, EP3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene32076.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32079.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32082.t1	ATEP3, EP3,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene32113.t1	ATEP3, EP3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene32150.t1	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000740	No alias	not classified & original description: CDS=1-501	0.03	OrthoFinder output from all 47 species
Dde_g18506	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g23248	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_20767	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os02g39330.1	ATEP3, EP3,...	Chitinase 6 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
LOC_Os04g09390.1	LOC_Os04g09390	Lectin OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
LOC_Os06g51050.1	HCHIB, B-CHI,...	Chitinase 3 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
LOC_Os06g51060.1	HCHIB, B-CHI,...	Chitinase 1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_5029466g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_741127g0010	No alias	Endochitinase At2g43610 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_8921185g0010	HCHIB, B-CHI,...	Basic endochitinase C OS=Secale cereale...	0.03	OrthoFinder output from all 47 species
Ore_g30042	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g57704	HCHIB, B-CHI,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g60891	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008764	ATEP3, EP3,...	not classified & original description: CDS=1-579	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0247.g026718	ATEP3, EP3,...	not classified & original description: CDS=1-798	0.04	OrthoFinder output from all 47 species
Sam_g00455	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13322	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g055800.2.1	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc10g073353.1.1	Solyc10g073353	Endochitinase A OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Zm00001e002252_P001	HCHIB, B-CHI,...	Chitinase 8 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Zm00001e007716_P001	Zm00001e007716	Endochitinase A OS=Zea mays (sp\|p29022\|chia_maize : 455.0)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	Interproscan
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	Interproscan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	32	127

External Links

No external refs found!

AMTR_s00001p00244170 (HCHIB, B-CHI,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation