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  5. Dac_g17149

Dac_g17149


Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0004943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g17149

Target Alias Description ECC score Gene Family Method Actions
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 OrthoFinder output from all 47 species
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.05 OrthoFinder output from all 47 species
Adi_g081321 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Ala_g11234 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g13968 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
Azfi_s0045.g029768 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Dcu_g04026 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Dde_g01696 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Gb_26926 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22730.1 LOC_Os03g22730 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.01 OrthoFinder output from all 47 species
MA_513089g0010 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
Nbi_g12240 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017383 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Sam_g19587 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Solyc09g083080.4.1 Solyc09g083080 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species
Spa_g15033 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Tin_g28216 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 2 65
IPR002687 Nop_dom 166 394
No external refs found!