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  5. Dac_g11214

Dac_g11214 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g11214

Target Alias Description ECC score Gene Family Method Actions
Aop_g29895 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
LOC_Os01g15860.1 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR010491 PRP1_N 97 265
IPR000626 Ubiquitin-like_dom 3 73
No external refs found!