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  5. Dac_g04691

Dac_g04691 (RDM12, IDN2)


Aliases : RDM12, IDN2

Description : regulatory protein of DNA methylation pathway *(IDN/IDP) & original description: none


Gene families : OG0002563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002563_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g04691

Target Alias Description ECC score Gene Family Method Actions
AT1G13790 No alias XH/XS domain-containing protein 0.02 OrthoFinder output from all 47 species
AT4G01180 No alias XH/XS domain-containing protein 0.02 OrthoFinder output from all 47 species
AT5G59390 No alias XH/XS domain-containing protein 0.02 OrthoFinder output from all 47 species
Als_g05645 RDM12, IDN2 regulatory protein of DNA methylation pathway *(IDN/IDP)... 0.03 OrthoFinder output from all 47 species
Ceric.17G024800.1 RDM12, IDN2,... regulatory protein of DNA methylation pathway *(IDN/IDP)... 0.03 OrthoFinder output from all 47 species
Dde_g19873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_16249g0010 No alias Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9285293g0010 RDM12, IDN2 IDN/IDP regulatory protein of DNA methylation pathway 0.04 OrthoFinder output from all 47 species
Solyc02g077170.3.1 Solyc02g077170 Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g06555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 122 235
IPR005381 Znf-XS_domain 50 89
IPR005379 FDM1-5/IDN2_XH 519 645
No external refs found!