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  5. Dac_g02506

Dac_g02506


Description : component *(Snu13) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g02506

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00103630 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00043p00189790 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
AT4G12600 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 OrthoFinder output from all 47 species
AT5G20160 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 OrthoFinder output from all 47 species
Als_g09839 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Aop_g04016 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0280.g062289 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Cba_g29914 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Ceric.03G070800.1 Ceric.03G070800 component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Ceric.03G071600.1 Ceric.03G071600 component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000600.11 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01015520001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Pir_g09212 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Sam_g08742 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.05 OrthoFinder output from all 47 species
Sam_g08743 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.09 OrthoFinder output from all 47 species
Solyc09g011420.3.1 Solyc09g011420 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
Spa_g54159 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Spa_g56417 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Tin_g30682 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.07 OrthoFinder output from all 47 species
Zm00001e038611_P002 Zm00001e038611 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 69 157
No external refs found!