Cre16.g676400

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp5 RNA helicase

Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g676400

Target	Alias	Description	ECC score	Gene Family Method
AT1G20920	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
Ala_g15868	No alias	RNA helicase *(RCF1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03604	No alias	RNA helicase *(RCF1) & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0051.g031460	No alias	RNA helicase *(RCF1) & original description: CDS=143-4114	0.02	OrthoFinder output from all 47 species
Ceric.37G065700.1	Ceric.37G065700	RNA helicase *(RCF1) & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000204.43	No alias	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Dcu_g06489	No alias	RNA helicase *(RCF1) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01023849001	No alias	DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_03798	No alias	RNA helicase (Prp5)	0.01	OrthoFinder output from all 47 species
Len_g49748	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g10272	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Smo178562	No alias	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Solyc12g098700.1.1	Solyc12g098700	RNA helicase (Prp5)	0.02	OrthoFinder output from all 47 species
Spa_g12514	No alias	RNA helicase *(RCF1) & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g08731	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e040204_P001	Zm00001e040204	RNA helicase (Prp5)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	930	1038
IPR011545	DEAD/DEAH_box_helicase_dom	721	893

External Links

No external refs found!

Cre16.g676400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation