Sequence Description Alias PCC hrr Cre02.g142700 0.938193582408 3 Cre03.g189605 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP6/CTR9 component 0.926209562266 3 Cre06.g270600 0.917969550735 3 Cre17.g714229 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor AtMYB98, MYB98 0.911758666617 4 Cre17.g715850 0.910925762861 28 Cre17.g729250 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.909286445951 7 Cre03.g174500 Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana 0.90910892817 30 Cre03.g190550 0.908725518571 25 Cre03.g151550 0.90652371959 11 Cre06.g309050 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component 0.906099479172 18 Cre17.g711457 0.904648704135 51 Cre12.g547450 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase guanine nucleotide exchange factor (RAB-GEF) activities.VPS9 RAB5 guanine nucleotide exchange factor VPS9, ATVPS9A, VPS9A 0.903066442157 12 Cre12.g518150 0.902900219345 22 Cre02.g095045 Protein FORGETTER 1 OS=Arabidopsis thaliana EMB1135 0.902877693574 86 Cre02.g089200 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Chlamydomonas reinhardtii SDG23, SUVH6 0.902002695866 15 Cre01.g015050 0.901015544821 94 Cre16.g675950 0.900832636077 33 Cre12.g506650 0.90037160873 54 Cre09.g403182 Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone GTB1 0.899412978743 31 Cre11.g478650 0.899021877422 20 Cre06.g293650 0.898228576769 21 Cre09.g396326 0.897888976351 22 Cre14.g618860 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component SRCAP, PIE1, chr13 0.896814307335 83 Cre10.g425501 Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica HAF01, HAC13, TAF1, HAF1, GTD1 0.896405546018 68 Cre07.g328550 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS18 component 0.896403151916 51 Cre11.g467751 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase ATHDA19, HDA1, HD1, ATHD1, HDA19, RPD3A 0.89528048344 26 Cre07.g313500 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.NUP214 nucleoporin 0.895099178107 39 Cre12.g526950 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF5 component RID3 0.894629113938 73 Cre06.g308300 0.894306342559 29 Cre05.g247000 0.894050981167 65 Cre01.g007100 0.893844993838 91 Cre07.g349950 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF6 component ATTAF6, TAF6, TAFII59 0.893657348327 32 Cre14.g628800 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.1 protease ATSBT6.1, S1P, ATS1P 0.89345170148 39 Cre04.g222300 0.892898339452 34 Cre10.g443350 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.Syndetin-like EARP-specific component 0.891469606588 35 Cre03.g199750 0.891397631996 39 Cre11.g482483 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component 0.891184823334 37 Cre12.g522850 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica 0.889826384409 38 Cre16.g686650 Protein degradation.peptide tagging.Ubiquitin-fold-modifier (UFM)-anchor addition.UFM ligase E3 protein 0.889730626569 39 Cre04.g225950 TAF1B, TAF1, HAF2 0.889224233883 48 Cre06.g251951 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Pfs2/FY component 0.889195647336 56 Cre01.g018200 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.889193572568 59 Cre12.g499750 0.888653701624 43 Cre12.g508250 0.888594148032 44 Cre08.g364050 Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component CHB3, ATSWI3D 0.88845021313 45 Cre15.g636650 0.887615283444 46 Cre03.g162150 0.887503704525 47 Cre13.g604600 0.887427090887 48 Cre09.g400664 0.88738617411 49 Cre01.g048100 0.887052201918 60 Cre08.g372750 0.886892026666 51 Cre02.g086887 Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.886186274837 52 Cre09.g398650 Cactin OS=Arabidopsis thaliana 0.886166820361 53 Cre01.g053360 0.885552874732 55 Cre08.g359450 0.884664344849 56 Cre14.g633650 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF6/PRP1/STA1 protein component STA1, EMB2770 0.883621580882 57 Cre07.g352600 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Chlamydomonas reinhardtii 0.883278965906 58 Cre09.g390319 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor EDA10 0.883002092788 59 Cre04.g223900 CASP, AtCASP 0.882258219684 60 Cre06.g310000 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4E large epsilon subunit 0.882208323893 61 Cre01.g051100 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component SKIP 0.88209645337 70 Cre12.g492200 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor HAT3.1 0.88114171149 75 Cre16.g662800 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF4 snRNP component EMB2776, LIS 0.88102760729 64 Cre04.g220600 0.880621747521 74 Cre01.g030450 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP26, SUP32, ATUBP26 0.880524997071 69 Cre16.g691050 PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana PRAF1 0.879614923906 96 Cre01.g048900 0.879405535908 69 Cre16.g692400 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.MRG histone H3K4/H3K36 methylation reader 0.879202200859 70 Cre07.g326300 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP1 component 0.878551406462 72 Cre16.g682750 0.877904464517 74 Cre03.g176400 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 112.2) & Serine/threonine-protein kinase STY17 OS=Arabidopsis thaliana 0.87760531918 76 Cre04.g228500 0.877466874739 80 Cre09.g394880 0.877241425825 78 Cre10.g464950 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC4/Tau131 component 0.876762614093 79 Cre12.g493000 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA6, KEA6 0.876227876375 80 Cre17.g741550 0.875624144164 81 Cre14.g632950 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.875350368923 82 Cre08.g378500 0.875093020795 83 Cre06.g278197 Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana 0.875072041787 84 Cre09.g403300 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.TFB2-type subunit 0.87388300478 86 Cre17.g700500 0.873681366999 87 Cre12.g515250 Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana 0.873439095375 88 Cre11.g481900 0.873403772566 89 Cre11.g467639 0.873208722604 91 Cre10.g459700 0.872744953652 95 Cre09.g413650 0.872339238613 97