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  5. Cre16.g651000

Cre16.g651000 (RPA70D, ATRPA70D)


Aliases : RPA70D, ATRPA70D

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component


Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g651000
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00046110 RPA70B,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.06 OrthoFinder output from all 47 species
AT5G08020 RPA70B, ATRPA70B RPA70-kDa subunit B 0.06 OrthoFinder output from all 47 species
AT5G61000 RPA70D, ATRPA70D Replication factor-A protein 1-related 0.05 OrthoFinder output from all 47 species
Ala_g25088 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Als_g07217 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Als_g08320 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Aop_g21131 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Aspi01Gene25029.t1 RPA70D,... component *(RPA1) of RPA presynaptic filament assembly... 0.01 OrthoFinder output from all 47 species
Aspi01Gene32891.t1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Azfi_s0093.g043249 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ceric.18G083500.1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.1 OrthoFinder output from all 47 species
Dac_g20470 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Dcu_g11388 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
GSVIVT01007849001 RPA70B, ATRPA70B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.07 OrthoFinder output from all 47 species
Gb_17349 RPA70B, ATRPA70B component RPA1 of single-stranded-DNA binding RPA... 0.13 OrthoFinder output from all 47 species
LOC_Os03g11540.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.05 OrthoFinder output from all 47 species
Len_g04778 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Len_g11233 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Lfl_g30854 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
MA_10308567g0040 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.03 OrthoFinder output from all 47 species
MA_10327014g0020 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
MA_10331305g0010 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
MA_10356314g0010 No alias Replication protein A 70 kDa DNA-binding subunit B... 0.03 OrthoFinder output from all 47 species
MA_10379695g0010 RPA70D, ATRPA70D Replication protein A 70 kDa DNA-binding subunit B... 0.01 OrthoFinder output from all 47 species
MA_10393806g0010 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.02 OrthoFinder output from all 47 species
Mp2g17030.1 RPA70D, ATRPA70D component RPA1 of single-stranded-DNA binding RPA... 0.12 OrthoFinder output from all 47 species
Msp_g06104 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
Nbi_g08948 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.1 OrthoFinder output from all 47 species
Ppi_g40052 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Solyc03g115050.3.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.06 OrthoFinder output from all 47 species
Spa_g41654 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Tin_g07108 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.09 OrthoFinder output from all 47 species
Zm00001e000841_P002 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.11 OrthoFinder output from all 47 species
Zm00001e038720_P001 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR031657 REPA_OB_2 323 416
IPR007199 Rep_factor-A_N 7 99
IPR013955 Rep_factor-A_C 494 638
No external refs found!