Coexpression cluster: Cluster_18 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 13.02% (25/192) 4.43 0.0 0.0
GO:0006260 DNA replication 6.77% (13/192) 5.84 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 13.54% (26/192) 3.19 0.0 0.0
GO:0090304 nucleic acid metabolic process 14.58% (28/192) 3.03 0.0 0.0
GO:0046483 heterocycle metabolic process 15.62% (30/192) 2.32 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 15.62% (30/192) 2.33 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 15.1% (29/192) 2.39 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 15.62% (30/192) 2.29 0.0 0.0
GO:0003677 DNA binding 10.42% (20/192) 2.76 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 15.62% (30/192) 2.04 0.0 0.0
GO:0003887 DNA-directed DNA polymerase activity 2.6% (5/192) 5.85 0.0 0.0
GO:0006270 DNA replication initiation 2.6% (5/192) 5.68 0.0 0.0
GO:0034061 DNA polymerase activity 2.6% (5/192) 5.53 0.0 1e-06
GO:0140097 catalytic activity, acting on DNA 3.65% (7/192) 4.09 0.0 2e-06
GO:0005524 ATP binding 14.06% (27/192) 1.61 0.0 3e-06
GO:0032559 adenyl ribonucleotide binding 14.06% (27/192) 1.61 0.0 3e-06
GO:0030554 adenyl nucleotide binding 14.06% (27/192) 1.53 1e-06 8e-06
GO:0015631 tubulin binding 3.65% (7/192) 3.78 1e-06 8e-06
GO:0003676 nucleic acid binding 11.46% (22/192) 1.69 1e-06 1.4e-05
GO:0008092 cytoskeletal protein binding 3.65% (7/192) 3.64 1e-06 1.5e-05
GO:1901265 nucleoside phosphate binding 15.1% (29/192) 1.39 2e-06 1.7e-05
GO:0000166 nucleotide binding 15.1% (29/192) 1.39 2e-06 1.7e-05
GO:0006281 DNA repair 3.65% (7/192) 3.56 2e-06 1.8e-05
GO:0035639 purine ribonucleoside triphosphate binding 14.06% (27/192) 1.43 3e-06 2.2e-05
GO:0032555 purine ribonucleotide binding 14.06% (27/192) 1.43 3e-06 2.2e-05
GO:0032553 ribonucleotide binding 14.06% (27/192) 1.41 3e-06 2.4e-05
GO:0051716 cellular response to stimulus 3.65% (7/192) 3.45 3e-06 2.4e-05
GO:0033554 cellular response to stress 3.65% (7/192) 3.45 3e-06 2.4e-05
GO:0006974 cellular response to DNA damage stimulus 3.65% (7/192) 3.45 3e-06 2.4e-05
GO:0097367 carbohydrate derivative binding 14.06% (27/192) 1.4 4e-06 2.5e-05
GO:0016779 nucleotidyltransferase activity 3.65% (7/192) 3.43 4e-06 2.5e-05
GO:0000808 origin recognition complex 1.56% (3/192) 6.11 5e-06 3.1e-05
GO:0036094 small molecule binding 15.1% (29/192) 1.32 5e-06 3.2e-05
GO:0097159 organic cyclic compound binding 19.79% (38/192) 1.08 7e-06 3.9e-05
GO:1901363 heterocyclic compound binding 19.79% (38/192) 1.08 7e-06 3.9e-05
GO:0017076 purine nucleotide binding 14.06% (27/192) 1.36 6e-06 3.9e-05
GO:0006950 response to stress 3.65% (7/192) 3.15 1.4e-05 7.7e-05
GO:0043168 anion binding 14.06% (27/192) 1.28 1.6e-05 8.7e-05
GO:0050896 response to stimulus 3.65% (7/192) 3.05 2.2e-05 0.000113
GO:0140640 catalytic activity, acting on a nucleic acid 4.69% (9/192) 2.38 6.2e-05 0.00032
GO:0051276 chromosome organization 2.08% (4/192) 4.14 6.9e-05 0.000336
GO:0008017 microtubule binding 2.6% (5/192) 3.53 6.8e-05 0.000341
GO:0043170 macromolecule metabolic process 15.62% (30/192) 1.06 9.4e-05 0.000447
GO:0003777 microtubule motor activity 2.6% (5/192) 3.43 9.7e-05 0.000453
GO:0003896 DNA primase activity 1.04% (2/192) 6.53 0.000117 0.000478
GO:0006269 DNA replication, synthesis of RNA primer 1.04% (2/192) 6.53 0.000117 0.000478
GO:0005664 nuclear origin of replication recognition complex 1.04% (2/192) 6.53 0.000117 0.000478
GO:0007018 microtubule-based movement 2.6% (5/192) 3.39 0.000109 0.000484
GO:0005634 nucleus 3.65% (7/192) 2.69 0.000107 0.000486
GO:0009987 cellular process 21.35% (41/192) 0.85 0.000115 0.0005
GO:0003774 cytoskeletal motor activity 2.6% (5/192) 3.3 0.000149 0.000601
GO:0044237 cellular metabolic process 16.67% (32/192) 0.98 0.000161 0.000634
GO:0007017 microtubule-based process 2.6% (5/192) 3.18 0.000221 0.000855
GO:0140657 ATP-dependent activity 3.12% (6/192) 2.66 0.000386 0.001465
GO:0043231 intracellular membrane-bounded organelle 3.65% (7/192) 2.38 0.000404 0.001506
GO:0043227 membrane-bounded organelle 3.65% (7/192) 2.37 0.000424 0.001552
GO:0043167 ion binding 15.1% (29/192) 0.95 0.000455 0.001638
GO:0006807 nitrogen compound metabolic process 16.67% (32/192) 0.87 0.000581 0.002054
GO:1903047 mitotic cell cycle process 1.04% (2/192) 5.53 0.000689 0.002395
GO:0005488 binding 24.48% (47/192) 0.66 0.000745 0.002505
GO:0006996 organelle organization 2.08% (4/192) 3.28 0.000736 0.002514
GO:0043015 gamma-tubulin binding 1.04% (2/192) 5.21 0.00114 0.003771
GO:0016043 cellular component organization 2.6% (5/192) 2.36 0.002946 0.009587
GO:0022402 cell cycle process 1.04% (2/192) 4.36 0.00399 0.012584
GO:0030983 mismatched DNA binding 1.04% (2/192) 4.36 0.00399 0.012584
GO:0044238 primary metabolic process 16.15% (31/192) 0.7 0.004813 0.014949
GO:0071840 cellular component organization or biogenesis 2.6% (5/192) 2.18 0.005033 0.015174
GO:0071704 organic substance metabolic process 16.67% (32/192) 0.68 0.004981 0.01524
GO:0006298 mismatch repair 1.04% (2/192) 4.07 0.00601 0.017855
GO:0043229 intracellular organelle 4.17% (8/192) 1.54 0.0067 0.019622
GO:0043226 organelle 4.17% (8/192) 1.53 0.006854 0.019789
GO:0140513 nuclear protein-containing complex 1.56% (3/192) 2.79 0.009188 0.026161
GO:0007076 mitotic chromosome condensation 0.52% (1/192) 6.53 0.010822 0.028444
GO:0000796 condensin complex 0.52% (1/192) 6.53 0.010822 0.028444
GO:0004146 dihydrofolate reductase activity 0.52% (1/192) 6.53 0.010822 0.028444
GO:0046654 tetrahydrofolate biosynthetic process 0.52% (1/192) 6.53 0.010822 0.028444
GO:0046653 tetrahydrofolate metabolic process 0.52% (1/192) 6.53 0.010822 0.028444
GO:0032299 ribonuclease H2 complex 0.52% (1/192) 6.53 0.010822 0.028444
GO:0003690 double-stranded DNA binding 1.04% (2/192) 3.36 0.015908 0.041281
GO:0008152 metabolic process 16.67% (32/192) 0.55 0.016844 0.043163
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Azolla filiculoides HCCA Cluster_2 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_6 0.021 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_7 0.016 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.026 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_54 0.038 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_96 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_50 0.071 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_18 0.082 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_50 0.028 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_21 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_36 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_63 0.023 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_132 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_138 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_147 0.046 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_34 0.026 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_38 0.021 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_97 0.024 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_100 0.079 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_19 0.1 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_59 0.019 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_91 0.018 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.016 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_53 0.066 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_81 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_130 0.022 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_18 0.022 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_139 0.038 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_32 0.03 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_11 0.077 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_51 0.021 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_61 0.028 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_141 0.047 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_7 0.042 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_154 0.032 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_66 0.037 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_2 0.017 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_109 0.043 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_20 0.154 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_34 0.046 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_17 0.042 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_143 0.045 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_27 0.034 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_80 0.018 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_83 0.103 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_170 0.022 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_22 0.023 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_79 0.09 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_173 0.028 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_83 0.016 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_25 0.016 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_11 0.047 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_19 0.051 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_27 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_21 0.077 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_22 0.033 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_45 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_53 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_130 0.018 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_31 0.028 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_34 0.017 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_87 0.024 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_9 0.051 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_138 0.021 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_146 0.037 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_37 0.105 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_85 0.115 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_109 0.023 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_15 0.087 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_121 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_31 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_85 0.097 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_120 0.027 OrthoFinder output from all 47 species Compare
Sequences (192) (download table)

InterPro Domains

GO Terms

Family Terms