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  5. Cre13.g589300

Cre13.g589300


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I complex.CAP-H component


Gene families : OG0005098 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g589300
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00055930 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
AT2G32590 No alias LOCATED IN: chloroplast; EXPRESSED IN: 17 plant... 0.05 OrthoFinder output from all 47 species
Ala_g22424 No alias component *(CAP-H) of condensin I complex & original... 0.06 OrthoFinder output from all 47 species
Als_g48614 No alias component *(CAP-H) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g08545 No alias component *(CAP-H) of condensin I complex & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene20029.t1 Aspi01Gene20029 component *(CAP-H) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0509.g074694 No alias component *(CAP-H) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
Ceric.07G099800.1 Ceric.07G099800 component *(CAP-H) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021462.43 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Dac_g15657 No alias component *(CAP-H) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g36452 No alias component *(CAP-H) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01030475001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Gb_02904 No alias component CAP-H of condensin I complex 0.07 OrthoFinder output from all 47 species
Gb_19968 No alias component CAP-H of condensin I complex 0.02 OrthoFinder output from all 47 species
LOC_Os01g34870.1 LOC_Os01g34870 component CAP-H of condensin I complex 0.07 OrthoFinder output from all 47 species
Len_g11591 No alias component *(CAP-H) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Lfl_g18514 No alias component *(CAP-H) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Lfl_g18999 No alias component *(CAP-H) of condensin I complex & original... 0.01 OrthoFinder output from all 47 species
MA_10431431g0010 No alias component CAP-H of condensin I complex 0.04 OrthoFinder output from all 47 species
MA_58375g0020 No alias component CAP-H of condensin I complex 0.01 OrthoFinder output from all 47 species
MA_98643g0010 No alias component CAP-H of condensin I complex 0.02 OrthoFinder output from all 47 species
Mp1g27450.1 No alias component CAP-H of condensin I complex 0.07 OrthoFinder output from all 47 species
Msp_g14467 No alias component *(CAP-H) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
Nbi_g03738 No alias component *(CAP-H) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
Ppi_g03206 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000557 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Solyc07g049680.4.1 Solyc07g049680 component CAP-H of condensin I complex 0.04 OrthoFinder output from all 47 species
Spa_g12373 No alias component *(CAP-H) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g51155 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Tin_g04131 No alias component *(CAP-H) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
Zm00001e020787_P001 Zm00001e020787 component CAP-H of condensin I complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEA Interproscan
BP GO:0007076 mitotic chromosome condensation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR022816 Condensin_barren_su2 61 856
No external refs found!