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  5. Cre12.g524100

Cre12.g524100


Description : RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA Cap-Binding complex (CBC).CBP80 component


Gene families : OG0004633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g524100
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Ala_g18568 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.01 OrthoFinder output from all 47 species
Als_g01146 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.04 OrthoFinder output from all 47 species
Aob_g18677 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.04 OrthoFinder output from all 47 species
Aop_g05374 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.01 OrthoFinder output from all 47 species
Ceric.38G051300.1 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.24 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g08222 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Dde_g02976 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Ehy_g05053 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01037230001 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.02 OrthoFinder output from all 47 species
Gb_13655 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.01 OrthoFinder output from all 47 species
LOC_Os03g22570.1 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.06 OrthoFinder output from all 47 species
Len_g07985 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.01 OrthoFinder output from all 47 species
MA_10142512g0010 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.01 OrthoFinder output from all 47 species
MA_10436272g0010 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.02 OrthoFinder output from all 47 species
MA_13750g0010 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.02 OrthoFinder output from all 47 species
Mp1g05560.1 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.07 OrthoFinder output from all 47 species
Msp_g25496 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Pir_g36866 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.01 OrthoFinder output from all 47 species
Ppi_g03962 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Sam_g12525 No alias component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.04 OrthoFinder output from all 47 species
Sam_g28009 No alias component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.04 OrthoFinder output from all 47 species
Smo115849 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.02 OrthoFinder output from all 47 species
Solyc10g005530.3.1 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.03 OrthoFinder output from all 47 species
Tin_g01260 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.03 OrthoFinder output from all 47 species
Zm00001e001643_P004 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016070 RNA metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR015172 MIF4G-like_typ-1 522 647
IPR015174 MIF4G-like_typ-2 827 933
No external refs found!