Cre12.g519900 (MURE, PDE316, ATMURE)

Aliases : MURE, PDE316, ATMURE

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component

Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g519900
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
AT1G63680	MURE, PDE316, ATMURE	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases	0.03	OrthoFinder output from all 47 species
Aop_g11920	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.01	OrthoFinder output from all 47 species
Cba_g03909	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Ceric.37G004600.1	MURE, PDE316,...	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Dcu_g13192	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
GSVIVT01019746001	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Mp6g20740.1	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.04	OrthoFinder output from all 47 species
Msp_g15618	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Sam_g51453	No alias	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.01	OrthoFinder output from all 47 species
Zm00001e037912_P001	MURE, PDE316,...	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004101	Mur_ligase_C	563	646
IPR013221	Mur_ligase_cen	461	543
IPR013221	Mur_ligase_cen	301	425

External Links

No external refs found!

Cre12.g519900 (MURE, PDE316, ATMURE)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation