Coexpression cluster: Cluster_71 (HCCA)

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Average Expression Profile



Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008168 methyltransferase activity 12.22% (11/90) 4.37 0.0 0.0
GO:0016070 RNA metabolic process 15.56% (14/90) 3.72 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 12.22% (11/90) 4.26 0.0 0.0
GO:0090304 nucleic acid metabolic process 15.56% (14/90) 3.12 0.0 0.0
GO:0006396 RNA processing 10.0% (9/90) 4.18 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 8.89% (8/90) 3.85 0.0 2e-06
GO:0140640 catalytic activity, acting on a nucleic acid 10.0% (9/90) 3.47 0.0 2e-06
GO:0034470 ncRNA processing 6.67% (6/90) 4.56 0.0 3e-06
GO:0006139 nucleobase-containing compound metabolic process 15.56% (14/90) 2.43 0.0 4e-06
GO:0046483 heterocycle metabolic process 15.56% (14/90) 2.31 1e-06 8e-06
GO:0006725 cellular aromatic compound metabolic process 15.56% (14/90) 2.32 1e-06 8e-06
GO:1901360 organic cyclic compound metabolic process 15.56% (14/90) 2.28 1e-06 9e-06
GO:0008173 RNA methyltransferase activity 4.44% (4/90) 5.3 3e-06 2.5e-05
GO:0034660 ncRNA metabolic process 6.67% (6/90) 3.89 3e-06 2.6e-05
GO:0034641 cellular nitrogen compound metabolic process 15.56% (14/90) 2.03 7e-06 5.5e-05
GO:0003723 RNA binding 6.67% (6/90) 3.17 5.4e-05 0.000389
GO:0009982 pseudouridine synthase activity 3.33% (3/90) 5.12 8.2e-05 0.000552
GO:0016072 rRNA metabolic process 3.33% (3/90) 4.96 0.000115 0.000698
GO:0006364 rRNA processing 3.33% (3/90) 4.96 0.000115 0.000698
GO:0001522 pseudouridine synthesis 3.33% (3/90) 4.89 0.000135 0.000777
GO:0016866 intramolecular transferase activity 3.33% (3/90) 4.75 0.000181 0.000993
GO:0008033 tRNA processing 3.33% (3/90) 4.3 0.000464 0.002426
GO:0009451 RNA modification 3.33% (3/90) 4.04 0.000799 0.003993
GO:0003676 nucleic acid binding 11.11% (10/90) 1.64 0.001335 0.006397
GO:0003674 molecular_function 42.22% (38/90) 0.63 0.001566 0.007204
GO:0016740 transferase activity 14.44% (13/90) 1.28 0.002451 0.010839
GO:0004540 ribonuclease activity 2.22% (2/90) 4.62 0.002916 0.01242
GO:0006399 tRNA metabolic process 3.33% (3/90) 3.3 0.003506 0.0144
GO:0005515 protein binding 11.11% (10/90) 1.4 0.004437 0.017009
GO:0005488 binding 26.67% (24/90) 0.78 0.004384 0.017385
GO:0034062 5'-3' RNA polymerase activity 2.22% (2/90) 4.1 0.006008 0.020321
GO:0032259 methylation 2.22% (2/90) 4.1 0.006008 0.020321
GO:0097747 RNA polymerase activity 2.22% (2/90) 4.1 0.006008 0.020321
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.22% (2/90) 4.16 0.005504 0.020416
GO:0016853 isomerase activity 3.33% (3/90) 2.98 0.006551 0.021526
GO:0043170 macromolecule metabolic process 15.56% (14/90) 1.06 0.00679 0.021689
GO:0003824 catalytic activity 24.44% (22/90) 0.75 0.008795 0.027334
GO:0016423 tRNA (guanine) methyltransferase activity 1.11% (1/90) 6.62 0.01012 0.027711
GO:0000213 tRNA-intron endonuclease activity 1.11% (1/90) 6.62 0.01012 0.027711
GO:0004549 tRNA-specific ribonuclease activity 1.11% (1/90) 6.62 0.01012 0.027711
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.11% (1/90) 6.62 0.01012 0.027711
GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters 1.11% (1/90) 6.62 0.01012 0.027711
GO:0097659 nucleic acid-templated transcription 2.22% (2/90) 3.49 0.013584 0.035504
GO:0006351 DNA-templated transcription 2.22% (2/90) 3.49 0.013584 0.035504
GO:0008170 N-methyltransferase activity 1.11% (1/90) 6.04 0.015143 0.035539
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 1.11% (1/90) 6.04 0.015143 0.035539
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 1.11% (1/90) 6.04 0.015143 0.035539
GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters 1.11% (1/90) 6.04 0.015143 0.035539
GO:0008175 tRNA methyltransferase activity 1.11% (1/90) 6.04 0.015143 0.035539
GO:0044237 cellular metabolic process 15.56% (14/90) 0.88 0.018753 0.043132
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Azolla filiculoides HCCA Cluster_6 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_52 0.019 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_16 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_67 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_69 0.016 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_283 0.016 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_149 0.024 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_116 0.017 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_6 0.016 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_29 0.015 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_79 0.015 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_133 0.016 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_136 0.017 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_163 0.015 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_145 0.023 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_168 0.017 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_11 0.02 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_146 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_153 0.016 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_70 0.019 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_178 0.017 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_44 0.018 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_51 0.022 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_11 0.02 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_71 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_38 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_125 0.021 OrthoFinder output from all 47 species Compare
Sequences (90) (download table)



InterPro Domains



GO Terms



Family Terms