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  5. Cre12.g508750

Cre12.g508750 (LHCA2*1, LHCA6)


Aliases : LHCA2*1, LHCA6

Description : Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g508750
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Aob_g01023 LHCA5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02866 LHCB5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13146 LHCA5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g16394 CAB4, LHCA4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g18767 LHCA5 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aob_g41226 LHCA2 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g20593 LHCA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g23800 LHCA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g03357 CAB4, LHCA4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09622 LHCA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26887 CAB4, LHCA4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g04973 LHCA5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g10903 LHCA2 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 37 175
No external refs found!