Cre12.g493400 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component

Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g493400
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00079920	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.05	OrthoFinder output from all 47 species
AT5G48600	ATCAP-C, ATSMC4,...	structural maintenance of chromosome 3	0.01	OrthoFinder output from all 47 species
Adi_g019665	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.02	OrthoFinder output from all 47 species
Ala_g23510	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Als_g16126	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Aop_g09601	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Aspi01Gene04548.t1	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Azfi_s0093.g043172	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.06	OrthoFinder output from all 47 species
Ceric.07G037500.1	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000711.41	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.05	OrthoFinder output from all 47 species
Dac_g01058	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
Dcu_g14679	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.11	OrthoFinder output from all 47 species
GSVIVT01011402001	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.01	OrthoFinder output from all 47 species
GSVIVT01011408001	ATCAP-C, ATSMC4,...	Cell cycle.mitosis and meiosis.chromatin...	0.08	OrthoFinder output from all 47 species
Gb_03310	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.11	OrthoFinder output from all 47 species
LOC_Os05g41750.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.08	OrthoFinder output from all 47 species
Len_g03914	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
MA_10325649g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.02	OrthoFinder output from all 47 species
MA_257738g0010	ATCAP-C, ATSMC4,...	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
MA_317249g0010	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.08	OrthoFinder output from all 47 species
MA_7369647g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.08	OrthoFinder output from all 47 species
MA_82161g0010	ATCAP-C, ATSMC4,...	Structural maintenance of chromosomes protein 4...	0.04	OrthoFinder output from all 47 species
Mp5g06430.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.12	OrthoFinder output from all 47 species
Msp_g32088	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.09	OrthoFinder output from all 47 species
Nbi_g09270	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.08	OrthoFinder output from all 47 species
Ppi_g09236	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.04	OrthoFinder output from all 47 species
Sam_g07968	No alias	component *(CAP-C/SMC4) of condensin I/II complex &...	0.07	OrthoFinder output from all 47 species
Solyc02g087980.3.1	ATCAP-C, ATSMC4,...	component CAP-C/SMC4 of condensin I/II complex	0.07	OrthoFinder output from all 47 species
Spa_g10497	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.06	OrthoFinder output from all 47 species
Tin_g01288	ATCAP-C, ATSMC4,...	component *(CAP-C/SMC4) of condensin I/II complex &...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004146	dihydrofolate reductase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	548	664
IPR003395	RecF/RecN/SMC_N	18	1223

External Links

No external refs found!

Cre12.g493400 (ATCAP-C, ATSMC4, SMC3, ATSMC3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation