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  5. Cre12.g487600

Cre12.g487600 (EMB1265, ATCPSF100,...)


Aliases : EMB1265, ATCPSF100, CPSF100, ESP5

Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component


Gene families : OG0005611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g487600
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Aev_g10848 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ala_g10439 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.01 OrthoFinder output from all 47 species
Als_g01056 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.01 OrthoFinder output from all 47 species
Ceric.09G061000.1 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Dcu_g01795 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Dde_g01650 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.01 OrthoFinder output from all 47 species
GSVIVT01028919001 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
LOC_Os09g39590.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp3g01860.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g18623 No alias component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Smo441578 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 OrthoFinder output from all 47 species
Solyc03g025540.3.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g04524 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Tin_g02081 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.01 OrthoFinder output from all 47 species
Zm00001e020763_P002 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR025069 Cpsf2_C 848 925
IPR001279 Metallo-B-lactamas 22 218
IPR011108 RMMBL 681 729
IPR022712 Beta_Casp 274 396
No external refs found!