Sequence Description Alias PCC hrr Cre12.g526950 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF5 component RID3 0.952492655484 1 Cre03.g174500 Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana 0.937850937199 3 Cre17.g745547 0.93659021082 5 Cre07.g318651 Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica FLD 0.934077434005 4 Cre13.g605050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.cytosolic CIA system.transfer phase.MMS19 component 0.931860066692 5 Cre07.g348900 0.927767548499 6 Cre01.g053350 0.927494703346 7 Cre04.g221650 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit A GYRA 0.923939288521 8 Cre16.g648250 0.919297414317 9 Cre10.g430850 0.918712984852 10 Cre01.g053360 0.917280896852 11 Cre02.g078150 0.915810838133 12 Cre17.g698750 0.915117174993 13 Cre07.g352600 Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Chlamydomonas reinhardtii 0.914411908747 14 Cre12.g522850 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica 0.914365805983 15 Cre11.g482483 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component 0.914017835494 16 Cre06.g251951 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Pfs2/FY component 0.909957803097 17 Cre09.g393551 ATPRP40C, PRP40C 0.909769776076 18 Cre03.g152450 0.909408865883 19 Cre01.g003450 0.909267372324 20 Cre06.g268450 Chromatin organisation.histone chaperone activities.CAF1 histone chaperone complex.CAF1c/MSI component NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4 0.908959838511 21 Cre03.g184300 0.908343434106 22 Cre03.g196651 DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana UVR7, ERCC1 0.908310210681 23 Cre14.g633100 0.90752334352 24 Cre07.g317800 SEC15A 0.907217153724 25 Cre12.g492200 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor HAT3.1 0.907070222855 26 Cre06.g283150 Protein translocation.peroxisome.importomer translocation system.receptor monoubiquitination system.Pex22 component 0.906549831411 27 Cre09.g408250 Elongation factor 1-alpha OS=Glycine max 0.905756417327 28 Cre11.g481900 0.905751865966 29 Cre14.g622050 0.905110159165 30 Cre08.g377200 CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana PKL, GYM, CHR6, SSL2, CHD3 0.904716376503 31 Cre13.g568700 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DCL1-HYL1 miRNA biogenesis complex.TOUGH component TGH 0.903022673736 52 Cre02.g142700 0.900894690738 54 Cre02.g095045 Protein FORGETTER 1 OS=Arabidopsis thaliana EMB1135 0.900592615584 93 Cre03.g192400 0.900182728826 35 Cre04.g217750 0.900113076003 36 Cre06.g293650 0.899906591255 37 Cre17.g711457 0.898815139862 75 Cre16.g662800 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF4 snRNP component EMB2776, LIS 0.898744252492 39 Cre12.g524100 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA Cap-Binding complex (CBC).CBP80 component 0.897281709754 40 Cre02.g143587 0.897202612551 41 Cre02.g075750 0.897139197993 42 Cre09.g403182 Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone GTB1 0.896711485809 43 Cre10.g465850 0.896324885634 44 Cre02.g080100 Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana CPSF73-II, ATCPSF73-II, EDA26 0.896080826157 45 Cre07.g313500 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.NUP214 nucleoporin 0.895934708953 46 Cre10.g425501 Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica HAF01, HAC13, TAF1, HAF1, GTD1 0.895932027832 70 Cre12.g506650 0.894996998731 80 Cre07.g324000 0.894823363157 49 Cre13.g573450 Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica ATCPSF160, CPSF160 0.894526185846 50 Cre17.g712200 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP2, ATUBP2 0.894370048705 57 Cre05.g232950 0.894229482554 52 Cre13.g567250 0.893854295461 53 Cre02.g146200 0.893092657446 54 Cre08.g363450 0.892990512931 55 Cre02.g083050 0.892724331204 56 Cre03.g148050 DNA damage response.DNA repair polymerase activities.DNA polymerase eta (POLH) POLH 0.892647298543 57 Cre03.g203730 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2 0.892377862163 58 Cre12.g493550 0.892171919806 59 Cre09.g415400 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component 0.892143343713 60 Cre08.g383650 0.891904628201 61 Cre10.g455250 0.89186798706 62 Cre03.g190550 0.89182524674 66 Cre08.g364050 Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component CHB3, ATSWI3D 0.890645225235 64 Cre01.g010650 0.890598542162 65 Cre01.g025808 0.889837660905 66 Cre13.g604600 0.889376927128 67 Cre01.g030450 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP26, SUP32, ATUBP26 0.889340099928 68 Cre09.g407400 0.889063654952 69 Cre03.g203000 0.888927872581 70 Cre01.g051100 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component SKIP 0.888687439767 71 Cre03.g187950 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana 0.888600847832 84 Cre05.g236500 Lipid metabolism.sphingolipid metabolism.ceramidase activities.NCER neutral ceramidase 0.888366191514 73 Cre01.g016001 0.888149491212 74 Cre07.g347700 0.886302065219 75 Cre16.g686650 Protein degradation.peptide tagging.Ubiquitin-fold-modifier (UFM)-anchor addition.UFM ligase E3 protein 0.886105404454 76 Cre06.g283634 0.885905678292 77 Cre01.g048100 0.88575723043 78 Cre13.g572150 Histone acetyltransferase MCC1 OS=Arabidopsis thaliana 0.884859334477 79 Cre01.g054650 0.883978511384 80 Cre11.g467712 0.883904756544 81 Cre08.g373050 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase EMB22, GK, AT-ACC1, ACC1, PAS3 0.882987142281 83 Cre02.g095800 0.882642843409 84 Cre15.g638950 0.882564067547 85 Cre06.g297550 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF8 component TAF8 0.882543368101 86 Cre09.g386800 0.88244482607 87 Cre11.g467591 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF45/RBM17 pre-mRNA splicing factor DRT111 0.882371453723 88 Cre16.g694208 0.881718240547 89 Cre08.g378700 0.881693318059 90 Cre09.g394880 0.88120456621 91 Cre04.g222300 0.88110664422 92 Cre08.g363950 0.880680659947 93 Cre11.g477250 0.88046643884 94 Cre10.g445900 0.880464869982 95 Cre16.g687301 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) BTAF1, RGD3, CHA16, ATBTAF1, CHR16 0.879715856306 96 Cre08.g382900 0.879559691213 97 Cre16.g695300 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC1/HPR1 component AtHPR1, AtTHO1, THO1, HPR1 0.879246135366 99 Cre03.g187550 0.878792095216 100