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  5. Cre10.g445900

Cre10.g445900


No description available


Gene families : OG0004735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g445900
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Aev_g07907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21574.t2 Aspi01Gene21574 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g07638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034951001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_11082 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g02020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13753 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc07g066290.3.1 Solyc07g066290 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g01135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011709_P002 Zm00001e011709 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032843 Jiv 982 1077
IPR001623 DnaJ_domain 875 940
No external refs found!